This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2fck

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:14, 24 February 2021) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2fck.gif|left|200px]]
 
-
{{Structure
+
==Structure of a putative ribosomal-protein-serine acetyltransferase from Vibrio cholerae.==
-
|PDB= 2fck |SIZE=350|CAPTION= <scene name='initialview01'>2fck</scene>, resolution 1.70&Aring;
+
<StructureSection load='2fck' size='340' side='right'caption='[[2fck]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>[[2fck]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibch Vibch]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FCK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FCK FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
-
|GENE= VC1889 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243277 Vibrio cholerae O1 biovar eltor str. N16961])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VC1889 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243277 VIBCH])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fck FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fck OCA], [https://pdbe.org/2fck PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fck RCSB], [https://www.ebi.ac.uk/pdbsum/2fck PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fck ProSAT], [https://www.topsan.org/Proteins/MCSG/2fck TOPSAN]</span></td></tr>
-
'''Structure of a putative ribosomal-protein-serine acetyltransferase from Vibrio cholerae.'''
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2FCK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_eltor_str._n16961 Vibrio cholerae o1 biovar eltor str. n16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FCK OCA].
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fc/2fck_consurf.spt"</scriptWhenChecked>
-
==Reference==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
Crystal structure of an acetyltransferase protein from Vibrio cholerae strain N16961., Cuff ME, Li H, Moy S, Watson J, Cipriani A, Joachimiak A, Proteins. 2007 Nov 1;69(2):422-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17623843 17623843]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Vibrio cholerae o1 biovar eltor str. n16961]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fck ConSurf].
-
[[Category: Cuff, M E.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: Li, H.]]
+
</StructureSection>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Large Structures]]
-
[[Category: Moy, S.]]
+
[[Category: Vibch]]
-
[[Category: GOL]]
+
[[Category: Cuff, M E]]
-
[[Category: NO3]]
+
[[Category: Joachimiak, A]]
-
[[Category: mcsg]]
+
[[Category: Li, H]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Structural genomic]]
-
[[Category: protein structure initiative]]
+
[[Category: Moy, S]]
-
[[Category: psi]]
+
[[Category: Mcsg]]
-
[[Category: ribosomal-protein]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: serine acetyltransferase]]
+
[[Category: Ribosomal-protein]]
-
[[Category: structural genomic]]
+
[[Category: Serine acetyltransferase]]
-
[[Category: unknown function]]
+
[[Category: Unknown function]]
-
[[Category: vibrio cholerae]]
+
[[Category: Vibrio cholerae]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:50:46 2008''
+

Current revision

Structure of a putative ribosomal-protein-serine acetyltransferase from Vibrio cholerae.

PDB ID 2fck

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools