This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ffs
From Proteopedia
(Difference between revisions)
| (13 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2ffs.gif|left|200px]]<br /><applet load="2ffs" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2ffs, resolution 2.500Å" /> | ||
| - | '''Structure of PR10-allergen-like protein PA1206 from Pseudomonas aeruginosa PAO1'''<br /> | ||
| - | == | + | ==Structure of PR10-allergen-like protein PA1206 from Pseudomonas aeruginosa PAO1== |
| - | + | <StructureSection load='2ffs' size='340' side='right'caption='[[2ffs]], [[Resolution|resolution]] 2.50Å' scene=''> | |
| - | [[Category: | + | == Structural highlights == |
| - | [[Category: | + | <table><tr><td colspan='2'>[[2ffs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FFS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FFS FirstGlance]. <br> |
| - | [[Category: Chruszcz, M | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Cymborowski, M T | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PA1206 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 PSEAE])</td></tr> |
| - | [[Category: Edwards, A | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ffs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ffs OCA], [https://pdbe.org/2ffs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ffs RCSB], [https://www.ebi.ac.uk/pdbsum/2ffs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ffs ProSAT], [https://www.topsan.org/Proteins/MCSG/2ffs TOPSAN]</span></td></tr> |
| - | [[Category: Kirillova, O | + | </table> |
| - | [[Category: | + | == Evolutionary Conservation == |
| - | [[Category: Minor, W | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Onopriyenko, O | + | Check<jmol> |
| - | [[Category: Savchenko, A | + | <jmolCheckbox> |
| - | [[Category: Skarina, T | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ff/2ffs_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Wang, S | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Zimmerman, M D | + | <text>to colour the structure by Evolutionary Conservation</text> |
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ffs ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Pseae]] | ||
| + | [[Category: Chruszcz, M]] | ||
| + | [[Category: Cymborowski, M T]] | ||
| + | [[Category: Edwards, A]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Kirillova, O]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Minor, W]] | ||
| + | [[Category: Onopriyenko, O]] | ||
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Skarina, T]] | ||
| + | [[Category: Wang, S]] | ||
| + | [[Category: Zimmerman, M D]] | ||
[[Category: 7-stranded beta sheet]] | [[Category: 7-stranded beta sheet]] | ||
| - | [[Category: | + | [[Category: C-terminal helix]] |
| - | [[Category: | + | [[Category: Mcsg]] |
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | [[Category: Unknown function]] | |
| - | [[Category: | + | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structure of PR10-allergen-like protein PA1206 from Pseudomonas aeruginosa PAO1
| |||||||||||
Categories: Large Structures | Pseae | Chruszcz, M | Cymborowski, M T | Edwards, A | Joachimiak, A | Kirillova, O | Structural genomic | Minor, W | Onopriyenko, O | Savchenko, A | Skarina, T | Wang, S | Zimmerman, M D | 7-stranded beta sheet | C-terminal helix | Mcsg | PSI, Protein structure initiative | Unknown function

