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2gkp

From Proteopedia

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[[Image:2gkp.gif|left|200px]]
 
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{{Structure
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==Protein of Unknown Function NMB0488 from Neisseria meningitidis==
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|PDB= 2gkp |SIZE=350|CAPTION= <scene name='initialview01'>2gkp</scene>, resolution 1.35&Aring;
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<StructureSection load='2gkp' size='340' side='right'caption='[[2gkp]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
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<table><tr><td colspan='2'>[[2gkp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neimb Neimb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GKP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GKP FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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|GENE= NMB0488 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=487 Neisseria meningitidis])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam07262 DUF1436]</span>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NMB0488 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122586 NEIMB])</td></tr>
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|RELATEDENTRY=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gkp OCA], [https://pdbe.org/2gkp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gkp RCSB], [https://www.ebi.ac.uk/pdbsum/2gkp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gkp ProSAT], [https://www.topsan.org/Proteins/MCSG/2gkp TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gkp OCA], [http://www.ebi.ac.uk/pdbsum/2gkp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2gkp RCSB]</span>
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</table>
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Protein of Unknown Function NMB0488 from Neisseria meningitidis'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/2gkp_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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2GKP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GKP OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Neisseria meningitidis]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gkp ConSurf].
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[[Category: Bargassa, M.]]
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<div style="clear:both"></div>
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[[Category: Joachimiak, A.]]
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__TOC__
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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</StructureSection>
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[[Category: Osipiuk, J.]]
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[[Category: Large Structures]]
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[[Category: Volkart, L.]]
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[[Category: Neimb]]
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[[Category: apc83854]]
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[[Category: Bargassa, M]]
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[[Category: hypothetical protein]]
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[[Category: Joachimiak, A]]
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[[Category: mcsg]]
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[[Category: Structural genomic]]
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[[Category: midwest center for structural genomic]]
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[[Category: Osipiuk, J]]
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[[Category: protein structure initiative]]
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[[Category: Volkart, L]]
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[[Category: psi]]
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[[Category: Apc83854]]
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[[Category: structural genomic]]
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[[Category: Hypothetical protein]]
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[[Category: Mcsg]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:17:55 2008''
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[[Category: PSI, Protein structure initiative]]
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[[Category: Unknown function]]

Current revision

Protein of Unknown Function NMB0488 from Neisseria meningitidis

PDB ID 2gkp

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OCA

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