This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2gax

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:54, 10 March 2021) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2gax.gif|left|200px]]
 
-
{{Structure
+
==Structure of Protein of Unknown Function Atu0240 from Agrobacteriium tumerfaciencs str. C58==
-
|PDB= 2gax |SIZE=350|CAPTION= <scene name='initialview01'>2gax</scene>, resolution 1.801&Aring;
+
<StructureSection load='2gax' size='340' side='right'caption='[[2gax]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE ION'>PO4</scene>
+
<table><tr><td colspan='2'>[[2gax]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrt5 Agrt5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GAX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GAX FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
|GENE= atu0240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=358 Agrobacterium tumefaciens])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">atu0240 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRT5])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gax FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gax OCA], [https://pdbe.org/2gax PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gax RCSB], [https://www.ebi.ac.uk/pdbsum/2gax PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gax ProSAT], [https://www.topsan.org/Proteins/MCSG/2gax TOPSAN]</span></td></tr>
-
'''Structure of Protein of Unknown Function Atu0240 from Agrobacteriium tumerfaciencs str. C58'''
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2GAX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GAX OCA].
+
<jmolCheckbox>
-
[[Category: Agrobacterium tumefaciens]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ga/2gax_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Binkowski, T A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Edwards, A.]]
+
</jmolCheckbox>
-
[[Category: Evdokimova, E.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gax ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: Kudritska, M.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: PO4]]
+
[[Category: Agrt5]]
-
[[Category: agrobacterium tumfacien]]
+
[[Category: Large Structures]]
-
[[Category: hypothetical protein]]
+
[[Category: Binkowski, T A]]
-
[[Category: mcsg]]
+
[[Category: Edwards, A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Evdokimova, E]]
-
[[Category: protein structure initiative]]
+
[[Category: Joachimiak, A]]
-
[[Category: psi]]
+
[[Category: Kudritska, M]]
-
[[Category: structural genomic]]
+
[[Category: Structural genomic]]
-
 
+
[[Category: Agrobacterium tumfacien]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:02:31 2008''
+
[[Category: Hypothetical protein]]
 +
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

Structure of Protein of Unknown Function Atu0240 from Agrobacteriium tumerfaciencs str. C58

PDB ID 2gax

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools