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2gfq
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2gfq" size="450" color="white" frame="true" align="right" spinBox="true" caption="2gfq, resolution 1.75Å" /> '''Structure of Protein...) |
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| - | [[Image:2gfq.gif|left|200px]]<br /><applet load="2gfq" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2gfq, resolution 1.75Å" /> | ||
| - | '''Structure of Protein of Unknown Function PH0006 from Pyrococcus horikoshii'''<br /> | ||
| - | == | + | ==Structure of Protein of Unknown Function PH0006 from Pyrococcus horikoshii== |
| - | + | <StructureSection load='2gfq' size='340' side='right'caption='[[2gfq]], [[Resolution|resolution]] 1.75Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2gfq]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GFQ FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PH0006 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gfq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfq OCA], [https://pdbe.org/2gfq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gfq RCSB], [https://www.ebi.ac.uk/pdbsum/2gfq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gfq ProSAT], [https://www.topsan.org/Proteins/MCSG/2gfq TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/DTDA_PYRHO DTDA_PYRHO]] D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.[HAMAP-Rule:MF_00562] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/2gfq_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gfq ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Pyrococcus horikoshii]] | [[Category: Pyrococcus horikoshii]] | ||
| - | + | [[Category: Cuff, M E]] | |
| - | [[Category: Cuff, M | + | [[Category: Edwards, A]] |
| - | [[Category: Edwards, A | + | [[Category: Gorodichtchenskaia, E]] |
| - | [[Category: Gorodichtchenskaia, E | + | [[Category: Joachimiak, A]] |
| - | [[Category: Joachimiak, A | + | [[Category: Structural genomic]] |
| - | [[Category: | + | [[Category: Savchenko, A]] |
| - | [[Category: Savchenko, A | + | [[Category: Skarina, T]] |
| - | [[Category: Skarina, T | + | [[Category: Mcsg]] |
| - | [[Category: | + | [[Category: Ph0006]] |
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | [[Category: | + | [[Category: Unknown function]] |
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| - | [[Category: | + | |
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Current revision
Structure of Protein of Unknown Function PH0006 from Pyrococcus horikoshii
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