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2gk3
From Proteopedia
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| - | [[Image:2gk3.gif|left|200px]]<br /><applet load="2gk3" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2gk3, resolution 2.25Å" /> | ||
| - | '''Cytoplasmic Protein STM3548 from Salmonella typhimurium'''<br /> | ||
| - | == | + | ==Cytoplasmic Protein STM3548 from Salmonella typhimurium== |
| - | + | <StructureSection load='2gk3' size='340' side='right'caption='[[2gk3]], [[Resolution|resolution]] 2.25Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[2gk3]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Salty Salty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GK3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GK3 FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| - | [[ | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DUF1355 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr> | |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gk3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gk3 OCA], [https://pdbe.org/2gk3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gk3 RCSB], [https://www.ebi.ac.uk/pdbsum/2gk3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gk3 ProSAT], [https://www.topsan.org/Proteins/MCSG/2gk3 TOPSAN]</span></td></tr> |
| - | [ | + | </table> |
| - | [[ | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | [[ | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/2gk3_consurf.spt"</scriptWhenChecked> | |
| - | [ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [ | + | </jmolCheckbox> |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gk3 ConSurf]. | |
| + | <div style="clear:both"></div> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The cytoplasmic protein Stm3548 of unknown function obtained from a strain of Salmonella typhimurium was determined by X-ray crystallography at a resolution of 2.25 A. The asymmetric unit contains a hexamer of structurally identical monomers. The monomer is a globular domain with a long beta-hairpin protrusion that distinguishes this structure. This beta-hairpin occupies a central position in the hexamer, and its residues participate in the majority of interactions between subunits of the hexamer. We suggest that the structure of Stm3548 presents a new hexamerization motif. Because the residues participating in interdomain interactions are highly conserved among close members of protein family DUF1355 and buried solvent accessible area for the hexamer is significant, the hexamer is most likely conserved as well. A light scattering experiment confirmed the presence of hexamer in solution. | ||
| - | + | Novel hexamerization motif is discovered in a conserved cytoplasmic protein from Salmonella typhimurium.,Petrova T, Cuff ME, Wu R, Kim Y, Holzle D, Joachimiak A J Struct Funct Genomics. 2007 Mar;8(1):19-25. Epub 2007 Oct 30. PMID:17968677<ref>PMID:17968677</ref> | |
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 2gk3" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Salty]] | ||
| + | [[Category: Cuff, M E]] | ||
| + | [[Category: Holzle, D]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Petrova, T]] | ||
| + | [[Category: Wu, R Y]] | ||
| + | [[Category: Mcsg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Salmonella typhimurium]] | ||
| + | [[Category: Stm3548]] | ||
| + | [[Category: Unknown function]] | ||
Current revision
Cytoplasmic Protein STM3548 from Salmonella typhimurium
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