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2gp4
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2gp4" size="350" color="white" frame="true" align="right" spinBox="true" caption="2gp4, resolution 2.49Å" /> '''Structure of [FeS]cl...) |
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| - | [[Image:2gp4.gif|left|200px]]<br /><applet load="2gp4" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2gp4, resolution 2.49Å" /> | ||
| - | '''Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis'''<br /> | ||
| - | == | + | ==Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis== |
| - | + | <StructureSection load='2gp4' size='340' side='right'caption='[[2gp4]], [[Resolution|resolution]] 2.49Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2gp4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sheon Sheon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GP4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GP4 FirstGlance]. <br> | ||
| + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">edd ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphogluconate_dehydratase Phosphogluconate dehydratase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.12 4.2.1.12] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gp4 OCA], [https://pdbe.org/2gp4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gp4 RCSB], [https://www.ebi.ac.uk/pdbsum/2gp4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gp4 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/2gp4_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gp4 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Phosphogluconate dehydratase]] | [[Category: Phosphogluconate dehydratase]] | ||
| - | [[Category: | + | [[Category: Sheon]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | + | [[Category: Schormann, N]] | |
| - | [[Category: Schormann, N | + | [[Category: Symersky, J]] |
| - | [[Category: Symersky, J | + | [[Category: Lyase]] |
| - | [[Category: | + | [[Category: N-terminal domain largely alpha-helical]] |
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | [[Category: | + | [[Category: Secsg]] |
| - | [[Category: | + | |
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Current revision
Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis
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