This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2gs5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:15, 10 March 2021) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2gs5.gif|left|200px]]
 
-
{{Structure
+
==1.5 A Crystal Structure of a Conserved Protein of Unknown Function from Corvnebacterium diphtheriae==
-
|PDB= 2gs5 |SIZE=350|CAPTION= <scene name='initialview01'>2gs5</scene>, resolution 1.50&Aring;
+
<StructureSection load='2gs5' size='340' side='right'caption='[[2gs5]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2gs5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cordi Cordi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GS5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GS5 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= GI:38201165 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1717 Corynebacterium diphtheriae])
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GI:38201165 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=257309 CORDI])</td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gs5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gs5 OCA], [https://pdbe.org/2gs5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gs5 RCSB], [https://www.ebi.ac.uk/pdbsum/2gs5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gs5 ProSAT], [https://www.topsan.org/Proteins/MCSG/2gs5 TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''1.5 A Crystal Structure of a Conserved Protein of Unknown Function from Corvnebacterium diphtheriae'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2GS5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebacterium diphtheriae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GS5 OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gs/2gs5_consurf.spt"</scriptWhenChecked>
-
[[Category: Corynebacterium diphtheriae]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Clancy, S.]]
+
</jmolCheckbox>
-
[[Category: Hatzos, C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gs5 ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Zhang, R.]]
+
</StructureSection>
-
[[Category: corvnebacterium diphtheria]]
+
[[Category: Cordi]]
-
[[Category: hypothetical protein]]
+
[[Category: Large Structures]]
-
[[Category: mcsg]]
+
[[Category: Clancy, S]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Hatzos, C]]
-
[[Category: protein structure initiative]]
+
[[Category: Joachimiak, A]]
-
[[Category: psi]]
+
[[Category: Structural genomic]]
-
[[Category: structural genomic]]
+
[[Category: Zhang, R]]
-
 
+
[[Category: Corvnebacterium diphtheria]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:08:21 2008''
+
[[Category: Hypothetical protein]]
 +
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

1.5 A Crystal Structure of a Conserved Protein of Unknown Function from Corvnebacterium diphtheriae

PDB ID 2gs5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools