This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3k6e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:40, 17 March 2021) (edit) (undo)
(Redirecting to 7lzg)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
==Crystal structure of cbs domain protein from streptococcus pneumoniae tigr4==
+
#REDIRECT [[7lzg]] This PDB entry is obsolete and replaced by 7lzg
-
<StructureSection load='3k6e' size='340' side='right' caption='[[3k6e]], [[Resolution|resolution]] 2.81&Aring;' scene=''>
+
-
== Structural highlights ==
+
-
<table><tr><td colspan='2'>[[3k6e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3ctu 3ctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K6E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K6E FirstGlance]. <br>
+
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SP_1878 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k6e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3k6e RCSB], [http://www.ebi.ac.uk/pdbsum/3k6e PDBsum]</span></td></tr>
+
-
</table>
+
-
== Evolutionary Conservation ==
+
-
[[Image:Consurf_key_small.gif|200px|right]]
+
-
Check<jmol>
+
-
<jmolCheckbox>
+
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k6/3k6e_consurf.spt"</scriptWhenChecked>
+
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
-
<text>to colour the structure by Evolutionary Conservation</text>
+
-
</jmolCheckbox>
+
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
-
<div style="clear:both"></div>
+
-
__TOC__
+
-
</StructureSection>
+
-
[[Category: Streptococcus pneumoniae]]
+
-
[[Category: Abdullah, J]]
+
-
[[Category: Chang, C]]
+
-
[[Category: Joachimiak, A]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Zhou, M]]
+
-
[[Category: Cbs domain protein]]
+
-
[[Category: Mcsg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Sp1878]]
+
-
[[Category: Streptococcus pneumoniae tigr4]]
+
-
[[Category: Unknown function]]
+

Current revision

  1. REDIRECT 7lzg This PDB entry is obsolete and replaced by 7lzg

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools