This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2guj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:24, 17 March 2021) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2guj.gif|left|200px]]<br /><applet load="2guj" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2guj, resolution 3.00&Aring;" />
 
-
'''Three dimensional structure of the protein P54332 from Bacillus Subtilis. Northeast Structural Genomics Consortium target sr353.'''<br />
 
-
==About this Structure==
+
==Three dimensional structure of the protein P54332 from Bacillus Subtilis. Northeast Structural Genomics Consortium target sr353.==
-
2GUJ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GUJ OCA].
+
<StructureSection load='2guj' size='340' side='right'caption='[[2guj]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
[[Category: Bacillus subtilis]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2guj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GUJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GUJ FirstGlance]. <br>
-
[[Category: Acton, T.]]
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Cunningham, K.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xkdM ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-
[[Category: Hunt, J F.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2guj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2guj OCA], [https://pdbe.org/2guj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2guj RCSB], [https://www.ebi.ac.uk/pdbsum/2guj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2guj ProSAT], [https://www.topsan.org/Proteins/NESGC/2guj TOPSAN]</span></td></tr>
-
[[Category: Janjua, H.]]
+
</table>
-
[[Category: Konover, K.]]
+
== Evolutionary Conservation ==
-
[[Category: Kuzin, A P.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Ma, L C.]]
+
Check<jmol>
-
[[Category: Montelione, G.]]
+
<jmolCheckbox>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gu/2guj_consurf.spt"</scriptWhenChecked>
-
[[Category: Seetharaman, J.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Tong, L.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Xiao, R.]]
+
</jmolCheckbox>
-
[[Category: Zhou, W.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2guj ConSurf].
-
[[Category: nesg]]
+
<div style="clear:both"></div>
-
[[Category: northeast structural genomics consortium]]
+
__TOC__
-
[[Category: p54332]]
+
</StructureSection>
-
[[Category: protein structure initiative]]
+
[[Category: Vibrio subtilis ehrenberg 1835]]
-
[[Category: psi]]
+
[[Category: Large Structures]]
-
[[Category: sr353]]
+
[[Category: Acton, T]]
-
[[Category: structural genomics]]
+
[[Category: Cunningham, K]]
-
[[Category: x-ray]]
+
[[Category: Hunt, J F]]
-
 
+
[[Category: Janjua, H]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:35:33 2008''
+
[[Category: Konover, K]]
 +
[[Category: Kuzin, A P]]
 +
[[Category: Ma, L C]]
 +
[[Category: Montelione, G]]
 +
[[Category: Structural genomic]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Xiao, R]]
 +
[[Category: Zhou, W]]
 +
[[Category: Nesg]]
 +
[[Category: P54332]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Sr353]]
 +
[[Category: Unknown function]]

Current revision

Three dimensional structure of the protein P54332 from Bacillus Subtilis. Northeast Structural Genomics Consortium target sr353.

PDB ID 2guj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools