This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2hqy
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:2hqy.png|left|200px]] | ||
| - | + | ==Crystal Structure of Conserved Protein of Unknown Function from Bacteroides thetaiotaomicron VPI-5482== | |
| - | + | <StructureSection load='2hqy' size='340' side='right'caption='[[2hqy]], [[Resolution|resolution]] 1.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2hqy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bactn Bactn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HQY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HQY FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BT_3689 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226186 BACTN])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hqy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hqy OCA], [https://pdbe.org/2hqy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hqy RCSB], [https://www.ebi.ac.uk/pdbsum/2hqy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hqy ProSAT], [https://www.topsan.org/Proteins/MCSG/2hqy TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | == | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hq/2hqy_consurf.spt"</scriptWhenChecked> | |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Abdullah, J | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Borovilos, M | + | </jmolCheckbox> |
| - | [[Category: Joachimiak, A | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hqy ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | [[Category: Nocek, B | + | __TOC__ |
| - | [[Category: Conserved hypothetical protein | + | </StructureSection> |
| + | [[Category: Bactn]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Abdullah, J]] | ||
| + | [[Category: Borovilos, M]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Nocek, B]] | ||
| + | [[Category: Conserved hypothetical protein]] | ||
[[Category: Mad]] | [[Category: Mad]] | ||
| - | [[Category: | + | [[Category: Mcsg]] |
| - | [[Category: Protein structure initiative]] | + | [[Category: PSI, Protein structure initiative]] |
| - | [[Category: | + | [[Category: Unknown function]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of Conserved Protein of Unknown Function from Bacteroides thetaiotaomicron VPI-5482
| |||||||||||
