This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2i5t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:28, 24 March 2021) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2i5t.png|left|200px]]
 
-
<!--
+
==Crystal Structure of hypothetical protein LOC79017 from Homo sapiens==
-
The line below this paragraph, containing "STRUCTURE_2i5t", creates the "Structure Box" on the page.
+
<StructureSection load='2i5t' size='340' side='right'caption='[[2i5t]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2i5t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I5T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I5T FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">C7orf24 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-
{{STRUCTURE_2i5t| PDB=2i5t | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i5t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i5t OCA], [https://pdbe.org/2i5t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i5t RCSB], [https://www.ebi.ac.uk/pdbsum/2i5t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i5t ProSAT], [https://www.topsan.org/Proteins/CESG/2i5t TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of hypothetical protein LOC79017 from Homo sapiens===
+
== Function ==
-
 
+
[[https://www.uniprot.org/uniprot/GGCT_HUMAN GGCT_HUMAN]] Catalyzes the formation of 5-oxoproline from gamma-glutamyl dipeptides and may play a significant role in glutathione homeostasis. Induces release of cytochrome c from mitochondria with resultant induction of apoptosis.<ref>PMID:16765912</ref> <ref>PMID:18515354</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2I5T is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I5T OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i5/2i5t_consurf.spt"</scriptWhenChecked>
-
Crystal structure of Homo sapiens protein LOC79017., Bae E, Bingman CA, Aceti DJ, Phillips GN Jr, Proteins. 2008 Feb 1;70(2):588-91. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17932939 17932939]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Homo sapiens]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Bae, E.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i5t ConSurf].
-
[[Category: Bingman, C A.]]
+
<div style="clear:both"></div>
-
[[Category: Bitto, E.]]
+
== References ==
-
[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
+
<references/>
-
[[Category: Jr, G N.Phillips.]]
+
__TOC__
-
[[Category: Wesenberg, G E.]]
+
</StructureSection>
-
[[Category: Center for eukaryotic structural genomic]]
+
[[Category: Human]]
 +
[[Category: Large Structures]]
 +
[[Category: Bae, E]]
 +
[[Category: Bingman, C A]]
 +
[[Category: Bitto, E]]
 +
[[Category: Structural genomic]]
 +
[[Category: Phillips, G N]]
 +
[[Category: Wesenberg, G E]]
[[Category: Cesg]]
[[Category: Cesg]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 16:18:26 2008''
 

Current revision

Crystal Structure of hypothetical protein LOC79017 from Homo sapiens

PDB ID 2i5t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools