This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2i9x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:11, 31 March 2021) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2i9x.png|left|200px]]
 
-
{{STRUCTURE_2i9x| PDB=2i9x | SCENE= }}
+
==Structural Genomics, the crystal structure of SpoVG conserved domain from Staphylococcus epidermidis ATCC 12228==
-
 
+
<StructureSection load='2i9x' size='340' side='right'caption='[[2i9x]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
===Structural Genomics, the crystal structure of SpoVG conserved domain from Staphylococcus epidermidis ATCC 12228===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2i9x]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staes Staes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I9X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I9X FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[2i9x]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_epidermidis Staphylococcus epidermidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I9X OCA].
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2i9z|2i9z]], [[2ia9|2ia9]]</div></td></tr>
-
[[Category: Staphylococcus epidermidis]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">spoVG, SE_2285 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176280 STAES])</td></tr>
-
[[Category: Bargassa, M.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i9x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i9x OCA], [https://pdbe.org/2i9x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i9x RCSB], [https://www.ebi.ac.uk/pdbsum/2i9x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i9x ProSAT], [https://www.topsan.org/Proteins/MCSG/2i9x TOPSAN]</span></td></tr>
-
[[Category: Joachimiak, A.]]
+
</table>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
== Function ==
-
[[Category: Maltseva, N.]]
+
[[https://www.uniprot.org/uniprot/SP5G_STAES SP5G_STAES]] Could be involved in septation (By similarity).
-
[[Category: Tan, K.]]
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i9/2i9x_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i9x ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Staes]]
 +
[[Category: Bargassa, M]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Maltseva, N]]
 +
[[Category: Tan, K]]
[[Category: Apc86317 1]]
[[Category: Apc86317 1]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Spovg]]
[[Category: Spovg]]
[[Category: Staphylococcus epidermidis atcc 12228]]
[[Category: Staphylococcus epidermidis atcc 12228]]
-
[[Category: Structural genomic]]
 
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

Structural Genomics, the crystal structure of SpoVG conserved domain from Staphylococcus epidermidis ATCC 12228

PDB ID 2i9x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools