This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2iaf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:11, 31 March 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2iaf.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila==
-
|PDB= 2iaf |SIZE=350|CAPTION= <scene name='initialview01'>2iaf</scene>, resolution 2.05&Aring;
+
<StructureSection load='2iaf' size='340' side='right'caption='[[2iaf]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene>
+
<table><tr><td colspan='2'>[[2iaf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_33152 Atcc 33152]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IAF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IAF FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
|GENE= sdhL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=446 Legionella pneumophila])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sdhL ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=446 ATCC 33152])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2iaf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iaf OCA], [https://pdbe.org/2iaf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2iaf RCSB], [https://www.ebi.ac.uk/pdbsum/2iaf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2iaf ProSAT], [https://www.topsan.org/Proteins/MCSG/2iaf TOPSAN]</span></td></tr>
-
'''Crystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila'''
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2IAF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IAF OCA].
+
<jmolCheckbox>
-
[[Category: Legionella pneumophila]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ia/2iaf_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Joachimiak, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Moy, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2iaf ConSurf].
-
[[Category: Mulligan, R.]]
+
<div style="clear:both"></div>
-
[[Category: Nocek, B.]]
+
__TOC__
-
[[Category: MG]]
+
</StructureSection>
-
[[Category: l-serine dehydratase]]
+
[[Category: Atcc 33152]]
-
[[Category: mad]]
+
[[Category: Large Structures]]
-
[[Category: mcsg]]
+
[[Category: Joachimiak, A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Structural genomic]]
-
[[Category: protein structure initiative]]
+
[[Category: Moy, S]]
-
[[Category: psi2]]
+
[[Category: Mulligan, R]]
-
[[Category: structural genomic]]
+
[[Category: Nocek, B]]
-
 
+
[[Category: L-serine dehydratase]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:27:09 2008''
+
[[Category: Mad]]
 +
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

Crystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila

PDB ID 2iaf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools