This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2iaf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:11, 31 March 2021) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2iaf.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila==
-
|PDB= 2iaf |SIZE=350|CAPTION= <scene name='initialview01'>2iaf</scene>, resolution 2.05&Aring;
+
<StructureSection load='2iaf' size='340' side='right'caption='[[2iaf]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2iaf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_33152 Atcc 33152]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IAF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IAF FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
|GENE= sdhL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=446 Legionella pneumophila])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sdhL ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=446 ATCC 33152])</td></tr>
-
|RELATEDENTRY=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2iaf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iaf OCA], [https://pdbe.org/2iaf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2iaf RCSB], [https://www.ebi.ac.uk/pdbsum/2iaf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2iaf ProSAT], [https://www.topsan.org/Proteins/MCSG/2iaf TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2iaf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iaf OCA], [http://www.ebi.ac.uk/pdbsum/2iaf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2iaf RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ia/2iaf_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2IAF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IAF OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Legionella pneumophila]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2iaf ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Moy, S.]]
+
</StructureSection>
-
[[Category: Mulligan, R.]]
+
[[Category: Atcc 33152]]
-
[[Category: Nocek, B.]]
+
[[Category: Large Structures]]
-
[[Category: l-serine dehydratase]]
+
[[Category: Joachimiak, A]]
-
[[Category: mad]]
+
[[Category: Structural genomic]]
-
[[Category: mcsg]]
+
[[Category: Moy, S]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Mulligan, R]]
-
[[Category: protein structure initiative]]
+
[[Category: Nocek, B]]
-
[[Category: psi2]]
+
[[Category: L-serine dehydratase]]
-
[[Category: structural genomic]]
+
[[Category: Mad]]
-
 
+
[[Category: Mcsg]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:41:37 2008''
+
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

Crystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila

PDB ID 2iaf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools