This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ibd
From Proteopedia
(Difference between revisions)
| (13 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2ibd.gif|left|200px]]<br /><applet load="2ibd" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2ibd, resolution 1.50Å" /> | ||
| - | '''Crystal structure of Probable transcriptional regulatory protein RHA5900'''<br /> | ||
| - | == | + | ==Crystal structure of Probable transcriptional regulatory protein RHA5900== |
| - | + | <StructureSection load='2ibd' size='340' side='right'caption='[[2ibd]], [[Resolution|resolution]] 1.50Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[2ibd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhojr Rhojr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IBD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IBD FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | [[Category: | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RHA1_ro04598 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=101510 RHOJR])</td></tr> |
| - | [[Category: | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ibd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ibd OCA], [https://pdbe.org/2ibd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ibd RCSB], [https://www.ebi.ac.uk/pdbsum/2ibd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ibd ProSAT], [https://www.topsan.org/Proteins/MCSG/2ibd TOPSAN]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: | + | == Function == |
| - | [[Category: | + | [[https://www.uniprot.org/uniprot/KSTR2_RHOJR KSTR2_RHOJR]] Controls the expression of a small regulon that may play a role in the utilization of cholesterol. |
| - | [[Category: | + | == Evolutionary Conservation == |
| - | [[Category: | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: protein | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ib/2ibd_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ibd ConSurf]. | |
| - | + | <div style="clear:both"></div> | |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Rhojr]] | ||
| + | [[Category: Chang, C]] | ||
| + | [[Category: Edwards, A M]] | ||
| + | [[Category: Evdokimova, E]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Kagan, O]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Mcsg]] | ||
| + | [[Category: Probable transcriptional regulatory protein]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Rhodococcus sp. rha1]] | ||
| + | [[Category: Unknown function]] | ||
Current revision
Crystal structure of Probable transcriptional regulatory protein RHA5900
| |||||||||||
