This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2id1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:13, 31 March 2021) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==X-Ray Crystal Structure of Protein CV0518 from Chromobacterium violaceum, Northeast Structural Genomics Consortium Target CvR5.==
==X-Ray Crystal Structure of Protein CV0518 from Chromobacterium violaceum, Northeast Structural Genomics Consortium Target CvR5.==
-
<StructureSection load='2id1' size='340' side='right' caption='[[2id1]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
+
<StructureSection load='2id1' size='340' side='right'caption='[[2id1]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2id1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ID1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ID1 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2id1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chrvo Chrvo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ID1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ID1 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene><br>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CV_0518 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536 Chromobacterium violaceum])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CV_0518 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243365 CHRVO])</td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2id1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2id1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2id1 RCSB], [http://www.ebi.ac.uk/pdbsum/2id1 PDBsum], [http://www.topsan.org/Proteins/NESGC/2id1 TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2id1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2id1 OCA], [https://pdbe.org/2id1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2id1 RCSB], [https://www.ebi.ac.uk/pdbsum/2id1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2id1 ProSAT], [https://www.topsan.org/Proteins/NESGC/2id1 TOPSAN]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/IOJAP_CHRVO IOJAP_CHRVO]] Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.[HAMAP-Rule:MF_01477]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/2id1_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/2id1_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2id1 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chromobacterium violaceum]]
+
[[Category: Chrvo]]
-
[[Category: Acton, T B.]]
+
[[Category: Large Structures]]
-
[[Category: Baran, M.]]
+
[[Category: Acton, T B]]
-
[[Category: Cunningham, K.]]
+
[[Category: Baran, M]]
-
[[Category: Forouhar, F.]]
+
[[Category: Cunningham, K]]
-
[[Category: Ho, C K.]]
+
[[Category: Forouhar, F]]
-
[[Category: Hunt, J F.]]
+
[[Category: Ho, C K]]
-
[[Category: Janjua, H.]]
+
[[Category: Hunt, J F]]
-
[[Category: Liu, J.]]
+
[[Category: Janjua, H]]
-
[[Category: Ma, L C.]]
+
[[Category: Liu, J]]
-
[[Category: Montelione, G T.]]
+
[[Category: Ma, L C]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Montelione, G T]]
-
[[Category: Rost, B.]]
+
[[Category: Structural genomic]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Rost, B]]
-
[[Category: Tong, L.]]
+
[[Category: Seetharaman, J]]
-
[[Category: Xiao, R.]]
+
[[Category: Tong, L]]
-
[[Category: Zhou, W.]]
+
[[Category: Xiao, R]]
 +
[[Category: Zhou, W]]
[[Category: Alpha-beta protein]]
[[Category: Alpha-beta protein]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

X-Ray Crystal Structure of Protein CV0518 from Chromobacterium violaceum, Northeast Structural Genomics Consortium Target CvR5.

PDB ID 2id1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2id1"
Personal tools