This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ifa
From Proteopedia
(Difference between revisions)
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2ifa.gif|left|200px]] | ||
| - | + | ==Crystal Structure of the PUTATIVE NITROREDUCTASE (SMU.260) IN COMPLEX WITH FMN FROM STREPTOCOCCUS MUTANS, NORTHEAST STRUCTURAL GENOMICS TARGET SMR5.== | |
| - | + | <StructureSection load='2ifa' size='340' side='right'caption='[[2ifa]], [[Resolution|resolution]] 2.30Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | | | + | <table><tr><td colspan='2'>[[2ifa]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Strmu Strmu]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1yw3 1yw3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IFA FirstGlance]. <br> |
| - | | | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr> |
| - | | | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1yw3|1yw3]]</div></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SMU.260 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=210007 STRMU])</td></tr> | |
| - | ''' | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ifa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ifa OCA], [https://pdbe.org/2ifa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ifa RCSB], [https://www.ebi.ac.uk/pdbsum/2ifa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ifa ProSAT], [https://www.topsan.org/Proteins/NESGC/2ifa TOPSAN]</span></td></tr> |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | == | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/if/2ifa_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Acton, T B | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Byler, T | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Chen, Y | + | </jmolCheckbox> |
| - | [[Category: Forouhar, F | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ifa ConSurf]. |
| - | [[Category: Hunt, J F | + | <div style="clear:both"></div> |
| - | [[Category: Ma, L C | + | __TOC__ |
| - | [[Category: Montelione, G T | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Tong, L | + | [[Category: Strmu]] |
| - | [[Category: Xiao, R | + | [[Category: Acton, T B]] |
| - | [[Category: | + | [[Category: Byler, T]] |
| - | + | [[Category: Chen, Y]] | |
| - | [[Category: | + | [[Category: Forouhar, F]] |
| - | [[Category: | + | [[Category: Hunt, J F]] |
| - | + | [[Category: Ma, L C]] | |
| - | [[Category: | + | [[Category: Montelione, G T]] |
| - | + | [[Category: Structural genomic]] | |
| - | + | [[Category: Tong, L]] | |
| - | + | [[Category: Xiao, R]] | |
| + | [[Category: Alpha-beta protein]] | ||
| + | [[Category: Nesg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Unknown function]] | ||
Current revision
Crystal Structure of the PUTATIVE NITROREDUCTASE (SMU.260) IN COMPLEX WITH FMN FROM STREPTOCOCCUS MUTANS, NORTHEAST STRUCTURAL GENOMICS TARGET SMR5.
| |||||||||||
