This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ehd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:43, 7 April 2021) (edit) (undo)
(Redirecting to 7m5h)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
==Crystal structure of conserved protein from Enterococcus faecalis V583==
+
#REDIRECT [[7m5h]] This PDB entry is obsolete and replaced by 7m5h
-
<StructureSection load='3ehd' size='340' side='right' caption='[[3ehd]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
+
-
== Structural highlights ==
+
-
<table><tr><td colspan='2'>[[3ehd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EHD FirstGlance]. <br>
+
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EF_2354 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 Enterococcus faecalis])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ehd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ehd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ehd RCSB], [http://www.ebi.ac.uk/pdbsum/3ehd PDBsum], [http://www.topsan.org/Proteins/MCSG/3ehd TOPSAN]</span></td></tr>
+
-
</table>
+
-
== Evolutionary Conservation ==
+
-
[[Image:Consurf_key_small.gif|200px|right]]
+
-
Check<jmol>
+
-
<jmolCheckbox>
+
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eh/3ehd_consurf.spt"</scriptWhenChecked>
+
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
-
<text>to colour the structure by Evolutionary Conservation</text>
+
-
</jmolCheckbox>
+
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
-
<div style="clear:both"></div>
+
-
__TOC__
+
-
</StructureSection>
+
-
[[Category: Enterococcus faecalis]]
+
-
[[Category: Joachimiak, A]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Moy, S]]
+
-
[[Category: Nocek, B]]
+
-
[[Category: Wu, R]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Pf05014]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Unknown function. member of pfam family pf05014 of which some members act as nucleoside 2-deoxyribosyltransferase]]
+

Current revision

  1. REDIRECT 7m5h This PDB entry is obsolete and replaced by 7m5h

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools