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2jsa

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{{Seed}}
 
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[[Image:2jsa.png|left|200px]]
 
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==Solution structure of Caenopore-5 (81 Pro Trans confomer)==
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The line below this paragraph, containing "STRUCTURE_2jsa", creates the "Structure Box" on the page.
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<StructureSection load='2jsa' size='340' side='right'caption='[[2jsa]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2jsa]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caeel Caeel]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JSA FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2js9|2js9]]</div></td></tr>
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-->
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">spp-5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6239 CAEEL])</td></tr>
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{{STRUCTURE_2jsa| PDB=2jsa | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jsa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsa OCA], [https://pdbe.org/2jsa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jsa RCSB], [https://www.ebi.ac.uk/pdbsum/2jsa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsa ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/js/2jsa_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jsa ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The caenopore-5 protein encoded by the spp-5 gene is one of the 33 caenopores identified in Caenorhabditis elegans and is a pore-forming peptide which plays an important role in the elimination of Escherichia coli ingested by the worm. Thus, caenopore-5 appears to contribute to the nutrition of the worm while simultaneously protecting the organism against pathogens. Here, three-dimensional heteronuclear NMR spectroscopy was used to solve the solution structure of caenopore-5. The NMR data revealed that two conformers of caenopore-5 exist in solution which differ by the isomerization of the peptide bond of Pro-81. The overall structure of the two caenopore-5 conformers consists of five amphiphatic helices connected by three disulfide bonds. The five helices are arranged in a folded leaf which is the characteristic signature of the SAPLIP family. The structure presented here is the first of an effector protein of the defensive system elucidated for the well-known model organism C. elegans.
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===Solution structure of Caenopore-5 (81 Pro Trans confomer)===
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Caenopore-5: the three-dimensional structure of an antimicrobial protein from Caenorhabditis elegans.,Mysliwy J, Dingley AJ, Stanisak M, Jung S, Lorenzen I, Roeder T, Leippe M, Grotzinger J Dev Comp Immunol. 2010 Mar;34(3):323-30. Epub 2009 Nov 26. PMID:19917307<ref>PMID:19917307</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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2JSA is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSA OCA].
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<div class="pdbe-citations 2jsa" style="background-color:#fffaf0;"></div>
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[[Category: Caenorhabditis elegans]]
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== References ==
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[[Category: Grotzinger, J.]]
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<references/>
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[[Category: Mysliwy, J.]]
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__TOC__
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</StructureSection>
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[[Category: Caeel]]
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[[Category: Large Structures]]
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[[Category: Grotzinger, J]]
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[[Category: Mysliwy, J]]
[[Category: Antimicrobial protein]]
[[Category: Antimicrobial protein]]
[[Category: Caenopore-5]]
[[Category: Caenopore-5]]
[[Category: Saposin-like fold]]
[[Category: Saposin-like fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 17:32:25 2009''
 

Current revision

Solution structure of Caenopore-5 (81 Pro Trans confomer)

PDB ID 2jsa

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