This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2jxa

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_2jxa", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...)
Current revision (08:01, 7 April 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2jxa.jpg|left|200px]]
 
-
<!--
+
==Mouse Latrophilin-1 GPCR Gal_lectin domain in complex with Rhamnose==
-
The line below this paragraph, containing "STRUCTURE_2jxa", creates the "Structure Box" on the page.
+
<StructureSection load='2jxa' size='340' side='right'caption='[[2jxa]], [[NMR_Ensembles_of_Models | 25 NMR models]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2jxa]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JXA FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=RAM:ALPHA-L-RHAMNOSE'>RAM</scene></td></tr>
-
-->
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2jx9|2jx9]]</div></td></tr>
-
{{STRUCTURE_2jxa| PDB=2jxa | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Lphn1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jxa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxa OCA], [https://pdbe.org/2jxa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jxa RCSB], [https://www.ebi.ac.uk/pdbsum/2jxa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jxa ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jx/2jxa_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jxa ConSurf].
 +
<div style="clear:both"></div>
-
'''Mouse Latrophilin-1 GPCR Gal_lectin domain in complex with Rhamnose'''
+
==See Also==
-
 
+
*[[Latrophilin|Latrophilin]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2JXA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXA OCA].
+
[[Category: Large Structures]]
-
[[Category: Mus musculus]]
+
[[Category: Lk3 transgenic mice]]
-
[[Category: Single protein]]
+
[[Category: Campbell, I D]]
-
[[Category: Campbell, I D.]]
+
[[Category: Vakonakis, I]]
-
[[Category: Vakonakis, I.]]
+
[[Category: Beta-sandwich]]
[[Category: Beta-sandwich]]
[[Category: Cell adhesion]]
[[Category: Cell adhesion]]
Line 31: Line 41:
[[Category: Transducer]]
[[Category: Transducer]]
[[Category: Transmembrane]]
[[Category: Transmembrane]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 30 12:49:49 2008''
 

Current revision

Mouse Latrophilin-1 GPCR Gal_lectin domain in complex with Rhamnose

PDB ID 2jxa

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools