This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7ctr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Closed form of PET-degrading cutinase Cut190 with thermostability-improving mutations of S226P/R228S/Q138A/D250C-E296C/Q123H/N202H==
==Closed form of PET-degrading cutinase Cut190 with thermostability-improving mutations of S226P/R228S/Q138A/D250C-E296C/Q123H/N202H==
-
<StructureSection load='7ctr' size='340' side='right'caption='[[7ctr]]' scene=''>
+
<StructureSection load='7ctr' size='340' side='right'caption='[[7ctr]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CTR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CTR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7ctr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"saccharomonospora_internatus"_(agre_et_al._1974)_greiner-mai_et_al._1988 "saccharomonospora internatus" (agre et al. 1974) greiner-mai et al. 1988]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CTR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CTR FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ctr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ctr OCA], [https://pdbe.org/7ctr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ctr RCSB], [https://www.ebi.ac.uk/pdbsum/7ctr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ctr ProSAT]</span></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DIO:1,4-DIETHYLENE+DIOXIDE'>DIO</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Cut190, SAMN02982918_2340 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1852 "Saccharomonospora internatus" (Agre et al. 1974) Greiner-Mai et al. 1988])</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cutinase Cutinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.74 3.1.1.74] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ctr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ctr OCA], [https://pdbe.org/7ctr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ctr RCSB], [https://www.ebi.ac.uk/pdbsum/7ctr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ctr ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The cutinase-like enzyme from the thermophile Saccharomonospora viridis AHK190, Cut190, is a good candidate to depolymerize polyethylene terephthalate (PET) efficiently. We previously developed a mutant of Cut190 (S226P/R228S), which we designated as Cut190* that has both increased activity and stability and solved its crystal structure. Recently, we showed that mutation of D250C/E296C on one of the Ca(2+) -binding sites resulted in a higher thermal stability while retaining its polyesterase activity. In this study, we solved the crystal structures of Cut190* mutants, Q138A/D250C-E296C/Q123H/N202H, designated as Cut190*SS, and its inactive S176A mutant, Cut190*SS_S176A, at high resolution. The overall structures were similar to those of Cut190* and Cut190*S176A reported previously. As expected, Cys250 and Cys296 were closely located to form a disulfide bond, which would assuredly contribute to increase the stability. Isothermal titration calorimetry experiments and 3D Reference Interaction Site Model calculations showed that the metal-binding properties of the Cut190*SS series were different from those of the Cut190* series. However, our results show that binding of Ca(2+) to the weak binding site, site 1, would be retained, enabling Cut190*SS to keep its ability to use Ca(2+) to accelerate the conformational change from the closed (inactive) to the open (active) form. While increasing the thermal stability, Cut190*SS could still express its enzymatic function. Even after incubation at 70 degrees C, which corresponds to the glass transition temperature of PET, the enzyme retained its activity well, implying a high applicability for industrial PET depolymerization using Cut190*SS.
 +
 +
Structural basis of mutants of PET-degrading enzyme from Saccharomonospora viridis AHK190 with high activity and thermal stability.,Emori M, Numoto N, Senga A, Bekker GJ, Kamiya N, Kobayashi Y, Ito N, Kawai F, Oda M Proteins. 2020 Dec 19. doi: 10.1002/prot.26034. PMID:33340163<ref>PMID:33340163</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 7ctr" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Cutinase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bekker GJ]]
+
[[Category: Bekker, G J]]
-
[[Category: Emori M]]
+
[[Category: Emori, M]]
-
[[Category: Ito N]]
+
[[Category: Ito, N]]
-
[[Category: Kamiya N]]
+
[[Category: Kamiya, N]]
-
[[Category: Kawai F]]
+
[[Category: Kawai, F]]
-
[[Category: Numoto N]]
+
[[Category: Numoto, N]]
-
[[Category: Oda M]]
+
[[Category: Oda, M]]
-
[[Category: Senga A]]
+
[[Category: Senga, A]]
 +
[[Category: Disulfide bond]]
 +
[[Category: Hydrolase]]
 +
[[Category: Metal binding]]
 +
[[Category: Polyesterase]]
 +
[[Category: Protein engineering]]

Revision as of 07:02, 14 April 2021

Closed form of PET-degrading cutinase Cut190 with thermostability-improving mutations of S226P/R228S/Q138A/D250C-E296C/Q123H/N202H

PDB ID 7ctr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools