This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ksv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:31, 14 April 2021) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum==
==The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum==
-
<StructureSection load='2ksv' size='340' side='right' caption='[[2ksv]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2ksv' size='340' side='right'caption='[[2ksv]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2ksv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chryseobacterium_proteolyticum Chryseobacterium proteolyticum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KSV FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2ksv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"chryseobacterium_proteolyticum"_yamaguchi_and_yokoe_2000 "chryseobacterium proteolyticum" yamaguchi and yokoe 2000]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KSV FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">prgA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=118127 Chryseobacterium proteolyticum])</td></tr>
+
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">prgA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=118127 "Chryseobacterium proteolyticum" Yamaguchi and Yokoe 2000])</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-glutamine_glutaminase Protein-glutamine glutaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.44 3.5.1.44] </span></td></tr>
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Protein-glutamine_glutaminase Protein-glutamine glutaminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.44 3.5.1.44] </span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ksv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ksv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ksv RCSB], [http://www.ebi.ac.uk/pdbsum/2ksv PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ksv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ksv OCA], [https://pdbe.org/2ksv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ksv RCSB], [https://www.ebi.ac.uk/pdbsum/2ksv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ksv ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 11: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/2ksv_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/2ksv_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ksv ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
 +
 +
==See Also==
 +
*[[Glutaminase 3D structures|Glutaminase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chryseobacterium proteolyticum]]
+
[[Category: Chryseobacterium proteolyticum yamaguchi and yokoe 2000]]
 +
[[Category: Large Structures]]
[[Category: Protein-glutamine glutaminase]]
[[Category: Protein-glutamine glutaminase]]
[[Category: Inagaki, F]]
[[Category: Inagaki, F]]

Current revision

The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum

PDB ID 2ksv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools