This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2fkb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:55, 5 May 2021) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2fkb.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12==
-
|PDB= 2fkb |SIZE=350|CAPTION= <scene name='initialview01'>2fkb</scene>, resolution 2.00&Aring;
+
<StructureSection load='2fkb' size='340' side='right'caption='[[2fkb]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[2fkb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FKB FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|GENE=
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04697 Nudix_Hydrolase_38], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK03759 PRK03759]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fkb OCA], [https://pdbe.org/2fkb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fkb RCSB], [https://www.ebi.ac.uk/pdbsum/2fkb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fkb ProSAT], [https://www.topsan.org/Proteins/MCSG/2fkb TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fkb OCA], [http://www.ebi.ac.uk/pdbsum/2fkb PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2fkb RCSB]</span>
+
== Evolutionary Conservation ==
-
}}
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
'''Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12'''
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fk/2fkb_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
==About this Structure==
+
<text>to colour the structure by Evolutionary Conservation</text>
-
2FKB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FKB OCA].
+
</jmolCheckbox>
-
[[Category: Escherichia coli]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fkb ConSurf].
-
[[Category: Single protein]]
+
<div style="clear:both"></div>
-
[[Category: Edwards, A.]]
+
__TOC__
-
[[Category: Evdokimova, E.]]
+
</StructureSection>
-
[[Category: Joachimiak, A.]]
+
[[Category: Ecoli]]
-
[[Category: Kudritska, M.]]
+
[[Category: Large Structures]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Edwards, A]]
-
[[Category: Nocek, B.]]
+
[[Category: Evdokimova, E]]
-
[[Category: Savchenko, A.]]
+
[[Category: Joachimiak, A]]
-
[[Category: escherichia coli k12]]
+
[[Category: Kudritska, M]]
-
[[Category: mad]]
+
[[Category: Structural genomic]]
-
[[Category: mcsg]]
+
[[Category: Nocek, B]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Savchenko, A]]
-
[[Category: protein structure initiative]]
+
[[Category: Escherichia coli k12]]
-
[[Category: psi]]
+
[[Category: Mad]]
-
[[Category: putative nudix hydrolase]]
+
[[Category: Mcsg]]
-
[[Category: putative protein]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: structural genomic]]
+
[[Category: Putative nudix hydrolase]]
-
 
+
[[Category: Putative protein]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:03:58 2008''
+
[[Category: Unknown function]]

Current revision

Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12

PDB ID 2fkb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2fkb"
Personal tools