This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2icp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:04, 12 May 2021) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2icp.gif|left|200px]]<br /><applet load="2icp" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2icp, resolution 1.880&Aring;" />
 
-
'''Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 4.0. Northeast Structural Genomics Consortium TARGET ER390.'''<br />
 
-
==About this Structure==
+
==Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 4.0. Northeast Structural Genomics Consortium TARGET ER390.==
-
2ICP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICP OCA].
+
<StructureSection load='2icp' size='340' side='right'caption='[[2icp]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
-
[[Category: Escherichia coli]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2icp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecol6 Ecol6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ICP FirstGlance]. <br>
-
[[Category: Abashidze, M.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
[[Category: Acton, T B.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Arbing, M A.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">higa ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=199310 ECOL6])</td></tr>
-
[[Category: Baran, M C.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2icp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2icp OCA], [https://pdbe.org/2icp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2icp RCSB], [https://www.ebi.ac.uk/pdbsum/2icp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2icp ProSAT], [https://www.topsan.org/Proteins/NESGC/2icp TOPSAN]</span></td></tr>
-
[[Category: Cunningham, K.]]
+
</table>
-
[[Category: Hunt, J F.]]
+
== Evolutionary Conservation ==
-
[[Category: Hurley, J M.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Inouye, M.]]
+
Check<jmol>
-
[[Category: Janjua, H.]]
+
<jmolCheckbox>
-
[[Category: Liu, J.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/2icp_consurf.spt"</scriptWhenChecked>
-
[[Category: Ma, L C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Montelione, G T.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
</jmolCheckbox>
-
[[Category: Rost, B.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2icp ConSurf].
-
[[Category: Woychik, N A.]]
+
<div style="clear:both"></div>
-
[[Category: Xiao, R.]]
+
__TOC__
-
[[Category: Zhao, L.]]
+
</StructureSection>
-
[[Category: MG]]
+
[[Category: Ecol6]]
-
[[Category: helix-turn-helix]]
+
[[Category: Large Structures]]
-
[[Category: nesg]]
+
[[Category: Abashidze, M]]
-
[[Category: northeast structural genomics consortium]]
+
[[Category: Acton, T B]]
-
[[Category: protein structure initiative]]
+
[[Category: Arbing, M A]]
-
[[Category: psi-2]]
+
[[Category: Baran, M C]]
-
[[Category: structural genomics]]
+
[[Category: Cunningham, K]]
-
 
+
[[Category: Hunt, J F]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:51:13 2008''
+
[[Category: Hurley, J M]]
 +
[[Category: Inouye, M]]
 +
[[Category: Janjua, H]]
 +
[[Category: Liu, J]]
 +
[[Category: Ma, L C]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Rost, B]]
 +
[[Category: Woychik, N A]]
 +
[[Category: Xiao, R]]
 +
[[Category: Zhao, L]]
 +
[[Category: Dna binding protein]]
 +
[[Category: Helix-turn-helix]]
 +
[[Category: Nesg]]
 +
[[Category: PSI, Protein structure initiative]]

Current revision

Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 4.0. Northeast Structural Genomics Consortium TARGET ER390.

PDB ID 2icp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools