This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2icp
From Proteopedia
(Difference between revisions)
| (13 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2icp.gif|left|200px]] | ||
| - | + | ==Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 4.0. Northeast Structural Genomics Consortium TARGET ER390.== | |
| - | + | <StructureSection load='2icp' size='340' side='right'caption='[[2icp]], [[Resolution|resolution]] 1.88Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | | | + | <table><tr><td colspan='2'>[[2icp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecol6 Ecol6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ICP FirstGlance]. <br> |
| - | | | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | | | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">higa ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=199310 ECOL6])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2icp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2icp OCA], [https://pdbe.org/2icp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2icp RCSB], [https://www.ebi.ac.uk/pdbsum/2icp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2icp ProSAT], [https://www.topsan.org/Proteins/NESGC/2icp TOPSAN]</span></td></tr> | |
| - | ''' | + | </table> |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | == | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/2icp_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Abashidze, M | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Acton, T B | + | </jmolCheckbox> |
| - | [[Category: Arbing, M A | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2icp ConSurf]. |
| - | [[Category: Baran, M C | + | <div style="clear:both"></div> |
| - | [[Category: Cunningham, K | + | __TOC__ |
| - | [[Category: Hunt, J F | + | </StructureSection> |
| - | [[Category: Hurley, J M | + | [[Category: Ecol6]] |
| - | [[Category: Inouye, M | + | [[Category: Large Structures]] |
| - | [[Category: Janjua, H | + | [[Category: Abashidze, M]] |
| - | [[Category: Liu, J | + | [[Category: Acton, T B]] |
| - | [[Category: Ma, L C | + | [[Category: Arbing, M A]] |
| - | [[Category: Montelione, G T | + | [[Category: Baran, M C]] |
| - | [[Category: | + | [[Category: Cunningham, K]] |
| - | [[Category: Rost, B | + | [[Category: Hunt, J F]] |
| - | [[Category: Woychik, N A | + | [[Category: Hurley, J M]] |
| - | [[Category: Xiao, R | + | [[Category: Inouye, M]] |
| - | [[Category: Zhao, L | + | [[Category: Janjua, H]] |
| - | [[Category: | + | [[Category: Liu, J]] |
| - | [[Category: | + | [[Category: Ma, L C]] |
| - | [[Category: | + | [[Category: Montelione, G T]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | + | [[Category: Rost, B]] | |
| - | + | [[Category: Woychik, N A]] | |
| - | + | [[Category: Xiao, R]] | |
| - | + | [[Category: Zhao, L]] | |
| - | + | [[Category: Dna binding protein]] | |
| + | [[Category: Helix-turn-helix]] | ||
| + | [[Category: Nesg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
Current revision
Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 4.0. Northeast Structural Genomics Consortium TARGET ER390.
| |||||||||||
Categories: Ecol6 | Large Structures | Abashidze, M | Acton, T B | Arbing, M A | Baran, M C | Cunningham, K | Hunt, J F | Hurley, J M | Inouye, M | Janjua, H | Liu, J | Ma, L C | Montelione, G T | Structural genomic | Rost, B | Woychik, N A | Xiao, R | Zhao, L | Dna binding protein | Helix-turn-helix | Nesg | PSI, Protein structure initiative
