Chaperonin 3D structures

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Line 8: Line 8:
*''Large subunit''
*''Large subunit''
 +
**[[7azp]] – hCpn60 – human – Cryo EM<br />
**[[3m6c]] – MtGroEL1 apical domain – ''Mycobacterium tuberculosis''<BR />
**[[3m6c]] – MtGroEL1 apical domain – ''Mycobacterium tuberculosis''<BR />
**[[1sjp]], [[3rtk]] – MtGroEL2 residues 42-539<BR />
**[[1sjp]], [[3rtk]] – MtGroEL2 residues 42-539<BR />
Line 16: Line 17:
**[[1dk7]], [[1la1]] - EcGroEL apical domain<br />
**[[1dk7]], [[1la1]] - EcGroEL apical domain<br />
**[[1fy9]], [[1fya]], [[1kid]], [[1jon]], [[3vz6]], [[3vz7]], [[3vz8]] – EcGroEL apical domain (mutant) <BR />
**[[1fy9]], [[1fya]], [[1kid]], [[1jon]], [[3vz6]], [[3vz7]], [[3vz8]] – EcGroEL apical domain (mutant) <BR />
-
**[[1srv]] – TtCPN60 apical domain - ''Thermus thermophilus''<BR />
+
**[[1srv]] – TtCpn60 apical domain - ''Thermus thermophilus''<BR />
-
**[[3osx]] - CPN60 apical domain – ''Xenorhabdus nematophila''<br />
+
**[[3osx]] - Cpn60 apical domain – ''Xenorhabdus nematophila''<br />
-
**[[1iok]] – CPN60 – ''Paracoccus denitrificans''<br />
+
**[[1iok]] – Cpn60 – ''Paracoccus denitrificans''<br />
**[[5da8]] - GroEL – ''Chlorobium tepidum''<br />
**[[5da8]] - GroEL – ''Chlorobium tepidum''<br />
**[[5cdk]], [[5cdj]], [[5cdi]] - GroEL apical domain – ''Chlamydomonas reinhardtii''<br />
**[[5cdk]], [[5cdj]], [[5cdi]] - GroEL apical domain – ''Chlamydomonas reinhardtii''<br />
 +
**[[6kfv]] - GroEL – ''Xanthomonas oryzae''<br />
*''Large subunit binary complex''
*''Large subunit binary complex''
 +
**[[4pj1]] - hGroEL + ADP <br />
**[[1kp8]] - EcGroEL (mutant) + ATP<BR />
**[[1kp8]] - EcGroEL (mutant) + ATP<BR />
**[[4aar]], [[4aas]], [[4aau]], [[4ab2]], [[4ab3]] - EcGroEL (mutant) + ATP – Cryo EM<br />
**[[4aar]], [[4aas]], [[4aau]], [[4ab2]], [[4ab3]] - EcGroEL (mutant) + ATP – Cryo EM<br />
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**[[4ki8]] - EcGroEL (mutant) + ADP<br />
**[[4ki8]] - EcGroEL (mutant) + ADP<br />
**[[1mnf]] – EcGroEL + polypeptide<BR />
**[[1mnf]] – EcGroEL + polypeptide<BR />
-
**[[2cgt]] – EcGroEL + capsid assbly protein GP31 – EM<BR />
+
**[[2cgt]] – EcGroEL + capsid assbly protein GP31 – Cryo EM<BR />
**[[1dkd]] - EcGroEL apical domain + polypeptide<br />
**[[1dkd]] - EcGroEL apical domain + polypeptide<br />
-
**[[4pj1]] - GroEL + ADP – human<br />
+
**[[7k3z]] – Cpn60 (mutant) + ATP – ''Plasmodium falciparum''<br />
*''Small subunit''
*''Small subunit''
**[[3nx6]] – GroES residues 40-134 (mutant) – ''Xanthomonas oryzae''<BR />
**[[3nx6]] – GroES residues 40-134 (mutant) – ''Xanthomonas oryzae''<BR />
-
**[[1wnr]] – TtCPN10 residues 1-94<BR />
+
**[[1wnr]] – TtCpn10 residues 1-94<BR />
-
**[[1p3h]], [[1hx5]] – MtCPN10<BR />
+
**[[1p3h]], [[1hx5]] – MtCpn10<BR />
-
**[[1p82]], [[1p83]] - MtCPN10 residues 1-25 - NMR<BR />
+
**[[1p82]], [[1p83]] - MtCpn10 residues 1-25 - NMR<BR />
**[[1egs]] - GroES residues 19-27 - NMR
**[[1egs]] - GroES residues 19-27 - NMR
*''Large + small subunit''
*''Large + small subunit''
 +
**[[6ht7]] - hCpn60 + Cpn10 + ADP <br />
 +
**[[6mrc]], [[6mrd]] - hCpn60 + Cpn10 + ADP – Cryo EM<br />
**[[1svt]], [[1pcq]] - EcGroEL + GroES<BR />
**[[1svt]], [[1pcq]] - EcGroEL + GroES<BR />
**[[1pf9]], [[1aon]], [[4pko]], [[5opx]] - EcGroEL + GroES + ADP<BR />
**[[1pf9]], [[1aon]], [[4pko]], [[5opx]] - EcGroEL + GroES + ADP<BR />
Line 50: Line 55:
**[[1gru]] - EcGroEL + GroES + ATP + ADP – Cryo EM<BR />
**[[1gru]] - EcGroEL + GroES + ATP + ADP – Cryo EM<BR />
**[[3zpz]], [[3zq0]], [[3zq1]] - EcGroEL + GroES + ADP – Cryo EM<br />
**[[3zpz]], [[3zq0]], [[3zq1]] - EcGroEL + GroES + ADP – Cryo EM<br />
-
**[[4v4o]], [[4pkn]] - TtCPN60 + CPN10 + ADP
+
**[[4v4o]], [[4pkn]] - TtCpn60 + Cpn10 + ADP
*'''Group II'''
*'''Group II'''
-
**[[3izh]], [[3izi]], [[3izj]], [[3izk]], [[3izl]], [[3izm]], [[3izn]], [[3los]], [[3iyf]], [[3j3x]] – MmCPN – ''Methanococcus maripaludis'' – EM<BR />
+
**[[3izh]], [[3izi]], [[3izj]], [[3izk]], [[3izl]], [[3izm]], [[3izn]], [[3los]], [[3iyf]], [[3j3x]] – MmCpn – ''Methanococcus maripaludis'' – EM<BR />
-
**[[3kfb]], [[3kfe]], [[3kfk]] – MmCPN<BR />
+
**[[3kfb]], [[3kfe]], [[3kfk]] – MmCpn<BR />
-
**[[5w79]] - MmCPN (mutant)<br />
+
**[[5w79]] - MmCpn (mutant)<br />
-
**[[3j02]], [[3j03]] – MmCPN (mutant) – Cryo EM<br />
+
**[[3j02]], [[3j03]] – MmCpn (mutant) – Cryo EM<br />
-
**[[3ruq]] - MmCPN + ADP<br />
+
**[[3ruq]] - MmCpn + ADP<br />
-
**[[3rus]], [[5w74]] - MmCPN (mutant) + ADP<br />
+
**[[3rus]], [[5w74]] - MmCpn (mutant) + ADP<br />
-
**[[3ruw]] - MmCPN (mutant) + ADP-AlF3<br />
+
**[[3ruw]] - MmCpn (mutant) + ADP-AlF3<br />
-
**[[3ruv]] - MmCPN (mutant) + ATP analog<br />
+
**[[3ruv]] - MmCpn (mutant) + ATP analog<br />
-
*'''CCT'''
+
*'''CCT''' or '''TRiC'''
-
**[[2xsm]], [[4b2t]] – bCPN CCT – bovine<BR />
+
**[[6krd]], [[6kre]], [[6ks6]], [[6ks8]], [[6qb8]] - hCpn CCT + ADP – Cryo EM<br />
-
**[[4v81]], [[4v94]], [[4v8r]] – CPN CCT - yeast<br />
+
**[[7lum]] - hCpn CCT + ATP – Cryo EM<br />
-
**[[3iyg]], [[4a0o]] - bCPN CCT – Cryo EM<BR />
+
**[[6nr8]], [[6nr9]], [[6nrb]], [[6nrc]], [[6nrd]] - hCpn CCT + HPFD – Cryo EM<br />
-
**[[4a0v]] - bCPN CCT + AMPPNP – Cryo EM<br />
+
**[[7lup]] - hCpn CCT + sigma 3 – Cryo EM<br />
-
**[[4a0w]] - bCPN CCT + ADP + AlF3 – Cryo EM<br />
+
**[[2xsm]], [[4b2t]] – bCpn CCT – bovine<BR />
-
**[[4a13]] - bCPN CCT + ADP – Cryo EM<br />
+
**[[3iyg]], [[4a0o]] - bCpn CCT – Cryo EM<BR />
-
**[[3ktt]] - bCPN CCT β subunit – Cryo EM<BR />
+
**[[4a0v]] - bCpn CCT + AMPPNP – Cryo EM<br />
-
**[[1gml]], [[1gn1]] - CPN CCT γ subunit apical domain – mouse
+
**[[4a0w]] - bCpn CCT + ADP + AlF3 – Cryo EM<br />
 +
**[[4a13]] - bCpn CCT + ADP – Cryo EM<br />
 +
**[[3ktt]] - bCpn CCT β subunit – Cryo EM<BR />
 +
**[[1gml]], [[1gn1]] - Cpn CCT γ subunit apical domain – mouse<br />
 +
**[[4v81]], [[4v94]], [[4v8r]] – Cpn CCT - yeast<br />
*'''Hsp33''' see [[Heat Shock Proteins]]
*'''Hsp33''' see [[Heat Shock Proteins]]
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**[[4xcd]] - SsTherm β subunit + ADP – ''Sulfolobus solfataricus''<br />
**[[4xcd]] - SsTherm β subunit + ADP – ''Sulfolobus solfataricus''<br />
**[[4xcg]], [[4xci]] - SsTherm α+β subunits + ADP<br />
**[[4xcg]], [[4xci]] - SsTherm α+β subunits + ADP<br />
-
 
+
**[[6xhi]] - SasTherm subunit + ADP – ''Saccharolobus solfataricus''<br />
-
**[[1lep]] – CPN-10 – ''Mycobacterium leprae''
+
**[[6xhj]] - SasTherm subunit + ATP <br />
 +
**[[1lep]] – Cpn10 – ''Mycobacterium leprae''
*'''Group III'''
*'''Group III'''

Revision as of 08:29, 6 June 2021

3D Structures of Chaperonin

Updated on 06-June-2021

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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