This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2or0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:03, 9 June 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2or0.jpg|left|200px]]
 
-
{{Structure
+
==Structural Genomics, the crystal structure of a putative hydroxylase from Rhodococcus sp. RHA1==
-
|PDB= 2or0 |SIZE=350|CAPTION= <scene name='initialview01'>2or0</scene>, resolution 2.10&Aring;
+
<StructureSection load='2or0' size='340' side='right'caption='[[2or0]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2or0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhojr Rhojr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OR0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OR0 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-
|GENE= RHA1_ro05068 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1831 Rhodococcus sp.])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1960 CaiA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01159 NcnH]</span>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RHA1_ro05068 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=101510 RHOJR])</td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2or0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2or0 OCA], [http://www.ebi.ac.uk/pdbsum/2or0 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2or0 RCSB]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2or0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2or0 OCA], [https://pdbe.org/2or0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2or0 RCSB], [https://www.ebi.ac.uk/pdbsum/2or0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2or0 ProSAT], [https://www.topsan.org/Proteins/MCSG/2or0 TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Evolutionary Conservation ==
-
'''Structural Genomics, the crystal structure of a putative hydroxylase from Rhodococcus sp. RHA1'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/or/2or0_consurf.spt"</scriptWhenChecked>
-
2OR0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OR0 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Rhodococcus sp.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Edwards, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2or0 ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: Kagen, O.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Savchenko, A.]]
+
[[Category: Large Structures]]
-
[[Category: Skarina, T.]]
+
[[Category: Rhojr]]
-
[[Category: Tan, K.]]
+
[[Category: Edwards, A]]
-
[[Category: apc7385]]
+
[[Category: Joachimiak, A]]
-
[[Category: mcsg]]
+
[[Category: Kagen, O]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Structural genomic]]
-
[[Category: protein structure initiative]]
+
[[Category: Savchenko, A]]
-
[[Category: psi-2]]
+
[[Category: Skarina, T]]
-
[[Category: putative hydroxylase]]
+
[[Category: Tan, K]]
-
[[Category: rhodococcus sp. rha1]]
+
[[Category: Apc7385]]
-
[[Category: structural genomic]]
+
[[Category: Mcsg]]
-
 
+
[[Category: Oxidoreductase]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:37:20 2008''
+
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Putative hydroxylase]]
 +
[[Category: Rhodococcus sp. rha1]]

Current revision

Structural Genomics, the crystal structure of a putative hydroxylase from Rhodococcus sp. RHA1

PDB ID 2or0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools