This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ota

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:05, 9 June 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ota.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of the UPF0352 protein CPS_2611 from Colwellia psychrerythraea. NESG target CsR4.==
-
|PDB= 2ota |SIZE=350|CAPTION= <scene name='initialview01'>2ota</scene>, resolution 2.20&Aring;
+
<StructureSection load='2ota' size='340' side='right'caption='[[2ota]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2ota]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Colp3 Colp3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTA FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= CPS_2611 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=28229 Colwellia psychrerythraea])
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CPS_2611 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=167879 COLP3])</td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam07208 DUF1414]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ota FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ota OCA], [https://pdbe.org/2ota PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ota RCSB], [https://www.ebi.ac.uk/pdbsum/2ota PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ota ProSAT], [https://www.topsan.org/Proteins/NESGC/2ota TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ota FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ota OCA], [http://www.ebi.ac.uk/pdbsum/2ota PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ota RCSB]</span>
+
== Evolutionary Conservation ==
-
}}
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
'''Crystal structure of the UPF0352 protein CPS_2611 from Colwellia psychrerythraea. NESG target CsR4.'''
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2ota_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
==About this Structure==
+
<text>to colour the structure by Evolutionary Conservation</text>
-
2OTA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Colwellia_psychrerythraea Colwellia psychrerythraea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTA OCA].
+
</jmolCheckbox>
-
[[Category: Colwellia psychrerythraea]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ota ConSurf].
-
[[Category: Single protein]]
+
<div style="clear:both"></div>
-
[[Category: Acton, T B.]]
+
__TOC__
-
[[Category: Cunningham, K.]]
+
</StructureSection>
-
[[Category: Hunt, J F.]]
+
[[Category: Colp3]]
-
[[Category: Janjua, H.]]
+
[[Category: Large Structures]]
-
[[Category: Liu, C.]]
+
[[Category: Acton, T B]]
-
[[Category: Ma, L-C.]]
+
[[Category: Cunningham, K]]
-
[[Category: Montelione, G T.]]
+
[[Category: Hunt, J F]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Janjua, H]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Liu, C]]
-
[[Category: Su, M.]]
+
[[Category: Ma, L C]]
-
[[Category: Tong, L.]]
+
[[Category: Montelione, G T]]
-
[[Category: Vorobiev, S M.]]
+
[[Category: Structural genomic]]
-
[[Category: Wang, H.]]
+
[[Category: Seetharaman, J]]
-
[[Category: Xiao, R.]]
+
[[Category: Su, M]]
-
[[Category: Zhou, W.]]
+
[[Category: Tong, L]]
-
[[Category: cps_2611]]
+
[[Category: Vorobiev, S M]]
-
[[Category: nesg]]
+
[[Category: Wang, H]]
-
[[Category: northeast structural genomics consortium]]
+
[[Category: Xiao, R]]
-
[[Category: protein structure initiative]]
+
[[Category: Zhou, W]]
-
[[Category: psi-2]]
+
[[Category: Cps_2611]]
-
[[Category: structural genomic]]
+
[[Category: Nesg]]
-
[[Category: unknown function]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: upf0352]]
+
[[Category: Unknown function]]
-
[[Category: y2611_colp3]]
+
[[Category: Upf0352]]
-
 
+
[[Category: Y2611_colp3]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:22:48 2008''
+

Current revision

Crystal structure of the UPF0352 protein CPS_2611 from Colwellia psychrerythraea. NESG target CsR4.

PDB ID 2ota

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ota"
Personal tools