This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oy9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:09, 9 June 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2oy9.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of an unknown conserved protein- Pfam: UPF0223==
-
|PDB= 2oy9 |SIZE=350|CAPTION= <scene name='initialview01'>2oy9</scene>, resolution 1.60&Aring;
+
<StructureSection load='2oy9' size='340' side='right'caption='[[2oy9]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OY9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OY9 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oy9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oy9 OCA], [https://pdbe.org/2oy9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oy9 RCSB], [https://www.ebi.ac.uk/pdbsum/2oy9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oy9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2oy9 TOPSAN]</span></td></tr>
-
|GENE= BH2638 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86665 Bacillus halodurans])
+
</table>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam05256 UPF0223]</span>
+
== Evolutionary Conservation ==
-
|RELATEDENTRY=
+
[[Image:Consurf_key_small.gif|200px|right]]
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oy9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oy9 OCA], [http://www.ebi.ac.uk/pdbsum/2oy9 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2oy9 RCSB]</span>
+
Check<jmol>
-
}}
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oy9_consurf.spt"</scriptWhenChecked>
-
'''Crystal structure of an unknown conserved protein- Pfam: UPF0223'''
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oy9 ConSurf].
-
2OY9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OY9 OCA].
+
<div style="clear:both"></div>
-
[[Category: Bacillus halodurans]]
+
__TOC__
-
[[Category: Single protein]]
+
</StructureSection>
-
[[Category: Burley, S K.]]
+
[[Category: Large Structures]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Burley SK]]
-
[[Category: Sugadev, R.]]
+
[[Category: Sugadev R]]
-
[[Category: Swaminathan, S.]]
+
[[Category: Swaminathan S]]
-
[[Category: 10286b]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: pfam]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
[[Category: upf0223]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:25:03 2008''
+

Current revision

Crystal structure of an unknown conserved protein- Pfam: UPF0223

PDB ID 2oy9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools