This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2oyr
From Proteopedia
(Difference between revisions)
| (10 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2oyr.jpg|left|200px]] | ||
| - | + | ==Crystal Structure of UPF0341 Protein (yhiQ) from Shigella flexneri in complex with S-Adenosyl Homocysteine, Northeast Structural Genomics Target SfR275== | |
| - | + | <StructureSection load='2oyr' size='340' side='right'caption='[[2oyr]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2oyr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri_2a Shigella flexneri 2a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OYR FirstGlance]. <br> | |
| - | | | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> |
| - | | | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yhiQ, SF3528, S_4240 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42897 Shigella flexneri 2a])</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyr OCA], [https://pdbe.org/2oyr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oyr RCSB], [https://www.ebi.ac.uk/pdbsum/2oyr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oyr ProSAT], [https://www.topsan.org/Proteins/NESGC/2oyr TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [[https://www.uniprot.org/uniprot/RSMJ_SHIFL RSMJ_SHIFL]] Specifically methylates the guanosine in position 1516 of 16S rRNA.[HAMAP-Rule:MF_01523] | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | == | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oyr_consurf.spt"</scriptWhenChecked> | |
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oyr ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Shigella flexneri 2a]] | [[Category: Shigella flexneri 2a]] | ||
| - | + | [[Category: Acton, T B]] | |
| - | [[Category: Acton, T B | + | [[Category: Baran, M C]] |
| - | [[Category: Baran, M C | + | [[Category: Fang, Y]] |
| - | [[Category: Fang, Y | + | [[Category: Forouhar, F]] |
| - | [[Category: Forouhar, F | + | [[Category: Hunt, J F]] |
| - | [[Category: Hunt, J F | + | [[Category: Janjua, H]] |
| - | [[Category: Janjua, H | + | [[Category: Liu, J]] |
| - | [[Category: Liu, J | + | [[Category: Montelione, G T]] |
| - | [[Category: Montelione, G T | + | [[Category: Structural genomic]] |
| - | [[Category: | + | [[Category: Seetharaman, J]] |
| - | [[Category: Seetharaman, J | + | [[Category: Su, M]] |
| - | [[Category: Su, M | + | [[Category: Tong, L]] |
| - | [[Category: Tong, L | + | [[Category: Xiao, R]] |
| - | [[Category: Xiao, R | + | [[Category: Alpha-beta protein]] |
| - | [[Category: | + | [[Category: Nesg]] |
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | [[Category: | + | [[Category: Unknown function]] |
| - | + | ||
| - | [[Category: | + | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of UPF0341 Protein (yhiQ) from Shigella flexneri in complex with S-Adenosyl Homocysteine, Northeast Structural Genomics Target SfR275
| |||||||||||
Categories: Large Structures | Shigella flexneri 2a | Acton, T B | Baran, M C | Fang, Y | Forouhar, F | Hunt, J F | Janjua, H | Liu, J | Montelione, G T | Structural genomic | Seetharaman, J | Su, M | Tong, L | Xiao, R | Alpha-beta protein | Nesg | PSI, Protein structure initiative | Unknown function
