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2oyr
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2oyr" size="450" color="white" frame="true" align="right" spinBox="true" caption="2oyr, resolution 2.00Å" /> '''Crystal Structure of...) |
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| - | [[Image:2oyr.jpg|left|200px]]<br /><applet load="2oyr" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2oyr, resolution 2.00Å" /> | ||
| - | '''Crystal Structure of UPF0341 Protein (yhiQ) from Shigella flexneri in complex with S-Adenosyl Homocysteine, Northeast Structural Genomics Target SfR275'''<br /> | ||
| - | == | + | ==Crystal Structure of UPF0341 Protein (yhiQ) from Shigella flexneri in complex with S-Adenosyl Homocysteine, Northeast Structural Genomics Target SfR275== |
| - | + | <StructureSection load='2oyr' size='340' side='right'caption='[[2oyr]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2oyr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri_2a Shigella flexneri 2a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OYR FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yhiQ, SF3528, S_4240 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42897 Shigella flexneri 2a])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyr OCA], [https://pdbe.org/2oyr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oyr RCSB], [https://www.ebi.ac.uk/pdbsum/2oyr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oyr ProSAT], [https://www.topsan.org/Proteins/NESGC/2oyr TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/RSMJ_SHIFL RSMJ_SHIFL]] Specifically methylates the guanosine in position 1516 of 16S rRNA.[HAMAP-Rule:MF_01523] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oyr_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oyr ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Shigella flexneri 2a]] | [[Category: Shigella flexneri 2a]] | ||
| - | + | [[Category: Acton, T B]] | |
| - | [[Category: Acton, T | + | [[Category: Baran, M C]] |
| - | [[Category: Baran, M | + | [[Category: Fang, Y]] |
| - | [[Category: Fang, Y | + | [[Category: Forouhar, F]] |
| - | [[Category: Forouhar, F | + | [[Category: Hunt, J F]] |
| - | [[Category: Hunt, J | + | [[Category: Janjua, H]] |
| - | [[Category: Janjua, H | + | [[Category: Liu, J]] |
| - | [[Category: Liu, J | + | [[Category: Montelione, G T]] |
| - | [[Category: Montelione, G | + | [[Category: Structural genomic]] |
| - | [[Category: | + | [[Category: Seetharaman, J]] |
| - | [[Category: Seetharaman, J | + | [[Category: Su, M]] |
| - | [[Category: Su, M | + | [[Category: Tong, L]] |
| - | [[Category: Tong, L | + | [[Category: Xiao, R]] |
| - | [[Category: Xiao, R | + | [[Category: Alpha-beta protein]] |
| - | [[Category: | + | [[Category: Nesg]] |
| - | + | [[Category: PSI, Protein structure initiative]] | |
| - | [[Category: | + | [[Category: Unknown function]] |
| - | [[Category: | + | |
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| - | [[Category: | + | |
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Current revision
Crystal Structure of UPF0341 Protein (yhiQ) from Shigella flexneri in complex with S-Adenosyl Homocysteine, Northeast Structural Genomics Target SfR275
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Categories: Large Structures | Shigella flexneri 2a | Acton, T B | Baran, M C | Fang, Y | Forouhar, F | Hunt, J F | Janjua, H | Liu, J | Montelione, G T | Structural genomic | Seetharaman, J | Su, M | Tong, L | Xiao, R | Alpha-beta protein | Nesg | PSI, Protein structure initiative | Unknown function
