This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p0n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:11, 9 June 2021) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p0n.gif|left|200px]]
 
-
{{Structure
+
==NMB1532 protein from Neisseria meningitidis, unknown function==
-
|PDB= 2p0n |SIZE=350|CAPTION= <scene name='initialview01'>2p0n</scene>, resolution 1.41&Aring;
+
<StructureSection load='2p0n' size='340' side='right'caption='[[2p0n]], [[Resolution|resolution]] 1.41&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2p0n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Neimb Neimb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P0N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P0N FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
|GENE= NMB1532 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=491 Neisseria meningitidis serogroup B])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NMB1532 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122586 NEIMB])</td></tr>
-
|RELATEDENTRY=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p0n OCA], [https://pdbe.org/2p0n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p0n RCSB], [https://www.ebi.ac.uk/pdbsum/2p0n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p0n ProSAT], [https://www.topsan.org/Proteins/MCSG/2p0n TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p0n OCA], [http://www.ebi.ac.uk/pdbsum/2p0n PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2p0n RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''NMB1532 protein from Neisseria meningitidis, unknown function'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p0/2p0n_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2P0N is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis_serogroup_b Neisseria meningitidis serogroup b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P0N OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Neisseria meningitidis serogroup b]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p0n ConSurf].
-
[[Category: Bargassa, M.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: Li, H.]]
+
</StructureSection>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Large Structures]]
-
[[Category: Osipiuk, J.]]
+
[[Category: Neimb]]
-
[[Category: apc83866]]
+
[[Category: Bargassa, M]]
-
[[Category: mcsg]]
+
[[Category: Joachimiak, A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Li, H]]
-
[[Category: protein structure initiative]]
+
[[Category: Structural genomic]]
-
[[Category: psi-2]]
+
[[Category: Osipiuk, J]]
-
[[Category: structural genomic]]
+
[[Category: Apc83866]]
-
[[Category: unknown function]]
+
[[Category: Mcsg]]
-
 
+
[[Category: PSI, Protein structure initiative]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:26:18 2008''
+
[[Category: Unknown function]]

Current revision

NMB1532 protein from Neisseria meningitidis, unknown function

PDB ID 2p0n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2p0n"
Personal tools