This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p0o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:11, 9 June 2021) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p0o.jpg|left|200px]]<br /><applet load="2p0o" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2p0o, resolution 2.15&Aring;" />
 
-
'''Crystal structure of a conserved protein from locus EF_2437 in Enterococcus faecalis with an unknown function'''<br />
 
-
==About this Structure==
+
==Crystal structure of a conserved protein from locus EF_2437 in Enterococcus faecalis with an unknown function==
-
2P0O is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis] with <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=NA:'>NA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P0O OCA].
+
<StructureSection load='2p0o' size='340' side='right'caption='[[2p0o]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
[[Category: Enterococcus faecalis]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2p0o]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Entfa Entfa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P0O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P0O FirstGlance]. <br>
-
[[Category: Cuff, M E.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EF_2437 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 ENTFA])</td></tr>
-
[[Category: Moy, S.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p0o OCA], [https://pdbe.org/2p0o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p0o RCSB], [https://www.ebi.ac.uk/pdbsum/2p0o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p0o ProSAT], [https://www.topsan.org/Proteins/MCSG/2p0o TOPSAN]</span></td></tr>
-
[[Category: Zhou, M.]]
+
</table>
-
[[Category: CL]]
+
== Evolutionary Conservation ==
-
[[Category: NA]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: enterococcus faecalis]]
+
Check<jmol>
-
[[Category: mcsg]]
+
<jmolCheckbox>
-
[[Category: midwest center for structural genomics]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p0/2p0o_consurf.spt"</scriptWhenChecked>
-
[[Category: pf05913]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: psi-2]]
+
</jmolCheckbox>
-
[[Category: structural genomics]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p0o ConSurf].
-
[[Category: tim barrel]]
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:24:36 2008''
+
</StructureSection>
 +
[[Category: Entfa]]
 +
[[Category: Large Structures]]
 +
[[Category: Cuff, M E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Moy, S]]
 +
[[Category: Zhou, M]]
 +
[[Category: Enterococcus faecali]]
 +
[[Category: Mcsg]]
 +
[[Category: Pf05913]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Tim barrel]]
 +
[[Category: Unknown function]]

Current revision

Crystal structure of a conserved protein from locus EF_2437 in Enterococcus faecalis with an unknown function

PDB ID 2p0o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools