This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p0o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:11, 9 June 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p0o.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of a conserved protein from locus EF_2437 in Enterococcus faecalis with an unknown function==
-
|PDB= 2p0o |SIZE=350|CAPTION= <scene name='initialview01'>2p0o</scene>, resolution 2.15&Aring;
+
<StructureSection load='2p0o' size='340' side='right'caption='[[2p0o]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
+
<table><tr><td colspan='2'>[[2p0o]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Entfa Entfa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P0O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P0O FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
|GENE= EF_2437 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 Enterococcus faecalis])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam05913 DUF871]</span>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EF_2437 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 ENTFA])</td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p0o OCA], [http://www.ebi.ac.uk/pdbsum/2p0o PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2p0o RCSB]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p0o OCA], [https://pdbe.org/2p0o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p0o RCSB], [https://www.ebi.ac.uk/pdbsum/2p0o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p0o ProSAT], [https://www.topsan.org/Proteins/MCSG/2p0o TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of a conserved protein from locus EF_2437 in Enterococcus faecalis with an unknown function'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p0/2p0o_consurf.spt"</scriptWhenChecked>
-
2P0O is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P0O OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Enterococcus faecalis]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Cuff, M E.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p0o ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Moy, S.]]
+
</StructureSection>
-
[[Category: Zhou, M.]]
+
[[Category: Entfa]]
-
[[Category: enterococcus faecali]]
+
[[Category: Large Structures]]
-
[[Category: mcsg]]
+
[[Category: Cuff, M E]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Joachimiak, A]]
-
[[Category: pf05913]]
+
[[Category: Structural genomic]]
-
[[Category: protein structure initiative]]
+
[[Category: Moy, S]]
-
[[Category: psi-2]]
+
[[Category: Zhou, M]]
-
[[Category: structural genomic]]
+
[[Category: Enterococcus faecali]]
-
[[Category: tim barrel]]
+
[[Category: Mcsg]]
-
 
+
[[Category: Pf05913]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:37:57 2008''
+
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Tim barrel]]
 +
[[Category: Unknown function]]

Current revision

Crystal structure of a conserved protein from locus EF_2437 in Enterococcus faecalis with an unknown function

PDB ID 2p0o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2p0o"
Personal tools