This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p13

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2p13" size="350" color="white" frame="true" align="right" spinBox="true" caption="2p13, resolution 1.65&Aring;" /> '''Transporter associat...)
Current revision (13:11, 9 June 2021) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p13.jpg|left|200px]]<br /><applet load="2p13" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2p13, resolution 1.65&Aring;" />
 
-
'''Transporter associated domain CorC_HlyC from Nitrosomonas europaea'''<br />
 
-
==About this Structure==
+
==Transporter associated domain CorC_HlyC from Nitrosomonas europaea==
-
2P13 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea] with <scene name='pdbligand=ACY:'>ACY</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P13 OCA].
+
<StructureSection load='2p13' size='340' side='right'caption='[[2p13]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
[[Category: Nitrosomonas europaea]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2p13]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacterium_nitrosomonas"_lehmann_and_neumann_1899 "bacterium nitrosomonas" lehmann and neumann 1899]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P13 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P13 FirstGlance]. <br>
-
[[Category: Clancy, S.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
-
[[Category: Hatzos, C.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NE2227 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=915 "Bacterium nitrosomonas" Lehmann and Neumann 1899])</td></tr>
-
[[Category: Kim, Y.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p13 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p13 OCA], [https://pdbe.org/2p13 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p13 RCSB], [https://www.ebi.ac.uk/pdbsum/2p13 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p13 ProSAT], [https://www.topsan.org/Proteins/MCSG/2p13 TOPSAN]</span></td></tr>
-
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+
</table>
-
[[Category: ACY]]
+
== Evolutionary Conservation ==
-
[[Category: alpha-beta structure]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: mcsg]]
+
Check<jmol>
-
[[Category: midwest center for structural genomics]]
+
<jmolCheckbox>
-
[[Category: protein structure initiative]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p1/2p13_consurf.spt"</scriptWhenChecked>
-
[[Category: psi-2]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: structural genomics]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:19:09 2008''
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p13 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bacterium nitrosomonas lehmann and neumann 1899]]
 +
[[Category: Large Structures]]
 +
[[Category: Clancy, S]]
 +
[[Category: Hatzos, C]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kim, Y]]
 +
[[Category: Structural genomic]]
 +
[[Category: Alpha-beta structure]]
 +
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

Transporter associated domain CorC_HlyC from Nitrosomonas europaea

PDB ID 2p13

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools