This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p9b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:19, 17 June 2021) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p9b.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of putative prolidase from Bifidobacterium longum==
-
|PDB= 2p9b |SIZE=350|CAPTION= <scene name='initialview01'>2p9b</scene>, resolution 1.70&Aring;
+
<StructureSection load='2p9b' size='340' side='right'caption='[[2p9b]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9B FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9b OCA], [https://pdbe.org/2p9b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9b RCSB], [https://www.ebi.ac.uk/pdbsum/2p9b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9b ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2p9b TOPSAN]</span></td></tr>
-
|GENE= BL1453 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=216816 Bifidobacterium longum])
+
</table>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01297 D-aminoacylase], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01299 Met_dep_hydrolase_A], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK07203 PRK07203]</span>
+
== Evolutionary Conservation ==
-
|RELATEDENTRY=
+
[[Image:Consurf_key_small.gif|200px|right]]
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p9b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9b OCA], [http://www.ebi.ac.uk/pdbsum/2p9b PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2p9b RCSB]</span>
+
Check<jmol>
-
}}
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9b_consurf.spt"</scriptWhenChecked>
-
'''Crystal structure of putative prolidase from Bifidobacterium longum'''
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p9b ConSurf].
-
2P9B is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bifidobacterium_longum Bifidobacterium longum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9B OCA].
+
<div style="clear:both"></div>
-
[[Category: Bifidobacterium longum]]
+
__TOC__
-
[[Category: Single protein]]
+
</StructureSection>
-
[[Category: Burley, S K.]]
+
[[Category: Large Structures]]
-
[[Category: Kumaran, D.]]
+
[[Category: Burley SK]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Kumaran D]]
-
[[Category: Swaminathan, S.]]
+
[[Category: Swaminathan S]]
-
[[Category: 9350a]]
+
-
[[Category: amidohydrolase]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: prolidase]]
+
-
[[Category: protein structure initiative ii]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:32:48 2008''
+

Current revision

Crystal structure of putative prolidase from Bifidobacterium longum

PDB ID 2p9b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2p9b"
Personal tools