This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2p9j
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2p9j" size="350" color="white" frame="true" align="right" spinBox="true" caption="2p9j, resolution 2.40Å" /> '''Crystal structure of...) |
|||
| (14 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2p9j.jpg|left|200px]]<br /><applet load="2p9j" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2p9j, resolution 2.40Å" /> | ||
| - | '''Crystal structure of AQ2171 from Aquifex aeolicus'''<br /> | ||
| - | == | + | ==Crystal structure of AQ2171 from Aquifex aeolicus== |
| - | + | <StructureSection load='2p9j' size='340' side='right'caption='[[2p9j]], [[Resolution|resolution]] 2.40Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2p9j]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquae Aquae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9J FirstGlance]. <br> | ||
| + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aq_2171 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224324 AQUAE])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9j OCA], [https://pdbe.org/2p9j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9j RCSB], [https://www.ebi.ac.uk/pdbsum/2p9j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9j ProSAT], [https://www.topsan.org/Proteins/RSGI/2p9j TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9j_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p9j ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Aquae]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Agari, Y]] | ||
| + | [[Category: Chen, L]] | ||
| + | [[Category: Ebihara, A]] | ||
| + | [[Category: Kuramitsu, S]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Rose, J P]] | ||
| + | [[Category: Shinkai, A]] | ||
| + | [[Category: Wang, B C]] | ||
| + | [[Category: Yang, H]] | ||
| + | [[Category: Yokoyama, S]] | ||
| + | [[Category: Aq2171]] | ||
[[Category: Aquifex aeolicus]] | [[Category: Aquifex aeolicus]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | [[Category: Riken]] | |
| - | + | [[Category: Rsgi]] | |
| - | + | [[Category: Secsg]] | |
| - | + | [[Category: Unknown function]] | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | [[Category: | + | |
| - | [[Category: | + | |
| - | [[Category: | + | |
| - | [[Category: | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of AQ2171 from Aquifex aeolicus
| |||||||||||
Categories: Aquae | Large Structures | Agari, Y | Chen, L | Ebihara, A | Kuramitsu, S | Structural genomic | Rose, J P | Shinkai, A | Wang, B C | Yang, H | Yokoyama, S | Aq2171 | Aquifex aeolicus | PSI, Protein structure initiative | Riken | Rsgi | Secsg | Unknown function
