This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p9m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:19, 17 June 2021) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of conserved hypothetical protein MJ0922 from Methanocaldococcus jannaschii DSM 2661==
==Crystal structure of conserved hypothetical protein MJ0922 from Methanocaldococcus jannaschii DSM 2661==
-
<StructureSection load='2p9m' size='340' side='right' caption='[[2p9m]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
+
<StructureSection load='2p9m' size='340' side='right'caption='[[2p9m]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2p9m]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Metja Metja]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P9M FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2p9m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Metja Metja]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9M FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MJ0922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MJ0922 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9m OCA], [http://pdbe.org/2p9m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p9m RCSB], [http://www.ebi.ac.uk/pdbsum/2p9m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9m ProSAT], [http://www.topsan.org/Proteins/RSGI/2p9m TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9m OCA], [https://pdbe.org/2p9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9m RCSB], [https://www.ebi.ac.uk/pdbsum/2p9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9m ProSAT], [https://www.topsan.org/Proteins/RSGI/2p9m TOPSAN]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 12: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9m_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9m_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 20:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Metja]]
[[Category: Metja]]
[[Category: Charz, J]]
[[Category: Charz, J]]
[[Category: Chen, L]]
[[Category: Chen, L]]
[[Category: Ebihara, A]]
[[Category: Ebihara, A]]
-
[[Category: Fu, Z-Q]]
+
[[Category: Fu, Z Q]]
[[Category: II, J T.Swindell]]
[[Category: II, J T.Swindell]]
[[Category: Kuramitsu, S]]
[[Category: Kuramitsu, S]]
Line 30: Line 31:
[[Category: Rose, J P]]
[[Category: Rose, J P]]
[[Category: Shinkai, A]]
[[Category: Shinkai, A]]
-
[[Category: Wang, B-C]]
+
[[Category: Wang, B C]]
[[Category: Yokoyama, S]]
[[Category: Yokoyama, S]]
[[Category: Zhao, M]]
[[Category: Zhao, M]]

Current revision

Crystal structure of conserved hypothetical protein MJ0922 from Methanocaldococcus jannaschii DSM 2661

PDB ID 2p9m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools