2pbz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:20, 17 June 2021) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pbz.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of an IMP biosynthesis protein PurP from Thermococcus kodakaraensis==
-
|PDB= 2pbz |SIZE=350|CAPTION= <scene name='initialview01'>2pbz</scene>, resolution 2.50&Aring;
+
<StructureSection load='2pbz' size='340' side='right'caption='[[2pbz]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ATP:ADENOSINE-5&#39;-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PBZ FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pbz OCA], [https://pdbe.org/2pbz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pbz RCSB], [https://www.ebi.ac.uk/pdbsum/2pbz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pbz ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2pbz TOPSAN]</span></td></tr>
-
|GENE= PurP, TK0431 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=311400 Thermococcus kodakarensis])
+
</table>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam06973 DUF1297], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam06849 DUF1246]</span>
+
== Evolutionary Conservation ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pbz OCA], [http://www.ebi.ac.uk/pdbsum/2pbz PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2pbz RCSB]</span>
+
[[Image:Consurf_key_small.gif|200px|right]]
-
}}
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
'''Crystal structure of an IMP biosynthesis protein PurP from Thermococcus kodakaraensis'''
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/2pbz_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2PBZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBZ OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pbz ConSurf].
-
[[Category: Single protein]]
+
<div style="clear:both"></div>
-
[[Category: Thermococcus kodakarensis]]
+
__TOC__
-
[[Category: Agarwal, R.]]
+
</StructureSection>
-
[[Category: Burley, S K.]]
+
[[Category: Large Structures]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Agarwal R]]
-
[[Category: Swaminathan, S.]]
+
[[Category: Burley SK]]
-
[[Category: 10188d]]
+
[[Category: Swaminathan S]]
-
[[Category: atp binding protein]]
+
-
[[Category: crystal structure]]
+
-
[[Category: imp biosynthesis]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-ii]]
+
-
[[Category: purp]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:39:13 2008''
+

Current revision

Crystal structure of an IMP biosynthesis protein PurP from Thermococcus kodakaraensis

PDB ID 2pbz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pbz"
Personal tools