This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pd1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:21, 17 June 2021) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2pd1.png|left|200px]]
 
-
<!--
+
==Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaea==
-
The line below this paragraph, containing "STRUCTURE_2pd1", creates the "Structure Box" on the page.
+
<StructureSection load='2pd1' size='340' side='right'caption='[[2pd1]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pd1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacterium_nitrosomonas"_lehmann_and_neumann_1899 "bacterium nitrosomonas" lehmann and neumann 1899]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PD1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2pd1| PDB=2pd1 | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NE2512 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=915 "Bacterium nitrosomonas" Lehmann and Neumann 1899])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pd1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pd1 OCA], [https://pdbe.org/2pd1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pd1 RCSB], [https://www.ebi.ac.uk/pdbsum/2pd1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pd1 ProSAT], [https://www.topsan.org/Proteins/MCSG/2pd1 TOPSAN]</span></td></tr>
-
===Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaea===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2PD1 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD1 OCA].
+
<jmolCheckbox>
-
[[Category: Nitrosomonas europaea]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/2pd1_consurf.spt"</scriptWhenChecked>
-
[[Category: Edwards, A.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Evdokimova, E.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joachimiak, A.]]
+
</jmolCheckbox>
-
[[Category: Kagan, O.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pd1 ConSurf].
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Osipiuk, J.]]
+
__TOC__
-
[[Category: Savchenko, A.]]
+
</StructureSection>
 +
[[Category: Bacterium nitrosomonas lehmann and neumann 1899]]
 +
[[Category: Large Structures]]
 +
[[Category: Edwards, A]]
 +
[[Category: Evdokimova, E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kagan, O]]
 +
[[Category: Structural genomic]]
 +
[[Category: Osipiuk, J]]
 +
[[Category: Savchenko, A]]
[[Category: Apc7253]]
[[Category: Apc7253]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
 
[[Category: Ne2512 protein]]
[[Category: Ne2512 protein]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 09:54:14 2008''
 

Current revision

Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaea

PDB ID 2pd1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pd1"
Personal tools