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2pgx
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2pgx" size="450" color="white" frame="true" align="right" spinBox="true" caption="2pgx, resolution 2.00Å" /> '''Crystal structure of...) |
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| - | [[Image:2pgx.gif|left|200px]]<br /><applet load="2pgx" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2pgx, resolution 2.00Å" /> | ||
| - | '''Crystal structure of UPF0341 protein yhiQ from E. coli, Northeast Structural Genomics Target ER585'''<br /> | ||
| - | == | + | ==Crystal structure of UPF0341 protein yhiQ from E. coli, Northeast Structural Genomics Target ER585== |
| - | + | <StructureSection load='2pgx' size='340' side='right'caption='[[2pgx]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[Category: | + | <table><tr><td colspan='2'>[[2pgx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Eco57 Eco57]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PGX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PGX FirstGlance]. <br> |
| - | [[Category: Acton, T | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Baran, M | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yhiQ, Z4897, ECs4369 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83334 ECO57])</td></tr> |
| - | [[Category: Fang, Y | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pgx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pgx OCA], [https://pdbe.org/2pgx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pgx RCSB], [https://www.ebi.ac.uk/pdbsum/2pgx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pgx ProSAT], [https://www.topsan.org/Proteins/NESGC/2pgx TOPSAN]</span></td></tr> |
| - | [[Category: Forouhar, F | + | </table> |
| - | [[Category: Hunt, J | + | == Function == |
| - | [[Category: Janjua, H | + | [[https://www.uniprot.org/uniprot/RSMJ_ECO57 RSMJ_ECO57]] Specifically methylates the guanosine in position 1516 of 16S rRNA.[HAMAP-Rule:MF_01523] |
| - | [[Category: Liu, J | + | == Evolutionary Conservation == |
| - | [[Category: Montelione, G | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: Seetharaman, J | + | <jmolCheckbox> |
| - | [[Category: Su, M | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pg/2pgx_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Tong, L | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Xiao, R | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pgx ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | + | __TOC__ | |
| - | [[Category: | + | </StructureSection> |
| - | + | [[Category: Eco57]] | |
| - | + | [[Category: Large Structures]] | |
| - | + | [[Category: Acton, T B]] | |
| + | [[Category: Baran, M C]] | ||
| + | [[Category: Fang, Y]] | ||
| + | [[Category: Forouhar, F]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Janjua, H]] | ||
| + | [[Category: Liu, J]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Su, M]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: Alpha-beta protein]] | ||
| + | [[Category: Nesg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Unknown function]] | ||
Current revision
Crystal structure of UPF0341 protein yhiQ from E. coli, Northeast Structural Genomics Target ER585
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