This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2pih
From Proteopedia
(Difference between revisions)
| (13 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2pih.jpg|left|200px]]<br /><applet load="2pih" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2pih, resolution 2.1Å" /> | ||
| - | '''Crystal structure of Protein ymcA from Bacillus subtilis, NorthEast Structural Genomics target SR375'''<br /> | ||
| - | == | + | ==Crystal structure of Protein ymcA from Bacillus subtilis, NorthEast Structural Genomics target SR375== |
| - | + | <StructureSection load='2pih' size='340' side='right'caption='[[2pih]], [[Resolution|resolution]] 2.10Å' scene=''> | |
| - | [[Category: | + | == Structural highlights == |
| - | [[Category: | + | <table><tr><td colspan='2'>[[2pih]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PIH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PIH FirstGlance]. <br> |
| - | [[Category: Abashidze, M | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Acton, T B | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ymcA, BSU17020 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr> |
| - | [[Category: Baran, M C | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pih OCA], [https://pdbe.org/2pih PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pih RCSB], [https://www.ebi.ac.uk/pdbsum/2pih PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pih ProSAT], [https://www.topsan.org/Proteins/NESGC/2pih TOPSAN]</span></td></tr> |
| - | [[Category: Cunningham, K | + | </table> |
| - | [[Category: Fang, Y | + | == Function == |
| - | [[Category: Forouhar, F | + | [[https://www.uniprot.org/uniprot/YMCA_BACSU YMCA_BACSU]] May work together with YlbF to regulate community development. |
| - | [[Category: Hunt, J F | + | == Evolutionary Conservation == |
| - | [[Category: Liu, J | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Ma, L | + | Check<jmol> |
| - | [[Category: Montelione, G T | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pi/2pih_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Rost, B | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Seetharaman, J | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Tong, L | + | </jmolCheckbox> |
| - | [[Category: Wang, D | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pih ConSurf]. |
| - | [[Category: Xia, R | + | <div style="clear:both"></div> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | + | [[Category: Vibrio subtilis ehrenberg 1835]] | |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | + | [[Category: Abashidze, M]] | |
| - | [[Category: | + | [[Category: Acton, T B]] |
| - | [[Category: | + | [[Category: Baran, M C]] |
| - | + | [[Category: Cunningham, K]] | |
| - | + | [[Category: Fang, Y]] | |
| + | [[Category: Forouhar, F]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Liu, J]] | ||
| + | [[Category: Ma, L C]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Rost, B]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Wang, D]] | ||
| + | [[Category: Xia, R]] | ||
| + | [[Category: Nesg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Regulate community development]] | ||
| + | [[Category: Unknown function]] | ||
| + | [[Category: Ymca]] | ||
Current revision
Crystal structure of Protein ymcA from Bacillus subtilis, NorthEast Structural Genomics target SR375
| |||||||||||
Categories: Vibrio subtilis ehrenberg 1835 | Large Structures | Abashidze, M | Acton, T B | Baran, M C | Cunningham, K | Fang, Y | Forouhar, F | Hunt, J F | Liu, J | Ma, L C | Montelione, G T | Structural genomic | Rost, B | Seetharaman, J | Tong, L | Wang, D | Xia, R | Nesg | PSI, Protein structure initiative | Regulate community development | Unknown function | Ymca
