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2pjd
From Proteopedia
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==Crystal structure of 16S rRNA methyltransferase RsmC== | ==Crystal structure of 16S rRNA methyltransferase RsmC== | ||
| - | <StructureSection load='2pjd' size='340' side='right' caption='[[2pjd]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='2pjd' size='340' side='right'caption='[[2pjd]], [[Resolution|resolution]] 2.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2pjd]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2pjd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PJD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PJD FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rsmC ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rsmC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Transferase Transferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.171, 2.1.1.172, 2.1.1.173 and 2.1.1.174 2.1.1.171, 2.1.1.172, 2.1.1.173 and 2.1.1.174] </span></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pjd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pjd OCA], [https://pdbe.org/2pjd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pjd RCSB], [https://www.ebi.ac.uk/pdbsum/2pjd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pjd ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/RSMC_ECOLI RSMC_ECOLI]] Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle.[HAMAP-Rule:MF_01862] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pj/2pjd_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pj/2pjd_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pjd ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2pjd" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Bacillus coli migula 1895]] |
| - | [[Category: Bujnicki, J M | + | [[Category: Large Structures]] |
| - | [[Category: Durawa, M | + | [[Category: Transferase]] |
| - | [[Category: Purta, E | + | [[Category: Bujnicki, J M]] |
| - | [[Category: Sivaraman, J | + | [[Category: Durawa, M]] |
| - | [[Category: Sunita, S | + | [[Category: Purta, E]] |
| - | [[Category: Tkaczuk, K L | + | [[Category: Sivaraman, J]] |
| + | [[Category: Sunita, S]] | ||
| + | [[Category: Tkaczuk, K L]] | ||
[[Category: Gene duplication]] | [[Category: Gene duplication]] | ||
[[Category: Rna modification]] | [[Category: Rna modification]] | ||
[[Category: Sam binding]] | [[Category: Sam binding]] | ||
| - | [[Category: Transferase]] | ||
Current revision
Crystal structure of 16S rRNA methyltransferase RsmC
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