This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pn0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:27, 17 June 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pn0.gif|left|200px]]
 
-
{{Structure
+
==Prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea==
-
|PDB= 2pn0 |SIZE=350|CAPTION= <scene name='initialview01'>2pn0</scene>, resolution 1.70&Aring;
+
<StructureSection load='2pn0' size='340' side='right'caption='[[2pn0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene>
+
<table><tr><td colspan='2'>[[2pn0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacterium_nitrosomonas"_lehmann_and_neumann_1899 "bacterium nitrosomonas" lehmann and neumann 1899]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PN0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PN0 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr>
-
|GENE= rnk, NE2130 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=915 Nitrosomonas europaea])
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2eul|2eul]]</div></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01272 GreA_GreB], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05753 PRK05753]</span>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rnk, NE2130 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=915 "Bacterium nitrosomonas" Lehmann and Neumann 1899])</td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pn0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pn0 OCA], [http://www.ebi.ac.uk/pdbsum/2pn0 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2pn0 RCSB]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pn0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pn0 OCA], [https://pdbe.org/2pn0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pn0 RCSB], [https://www.ebi.ac.uk/pdbsum/2pn0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pn0 ProSAT], [https://www.topsan.org/Proteins/MCSG/2pn0 TOPSAN]</span></td></tr>
-
}}
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pn/2pn0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pn0 ConSurf].
 +
<div style="clear:both"></div>
-
'''Prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea'''
+
==See Also==
-
 
+
*[[Elongation factor 3D structures|Elongation factor 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2PN0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PN0 OCA].
+
[[Category: Bacterium nitrosomonas lehmann and neumann 1899]]
-
[[Category: Nitrosomonas europaea]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Edwards, A]]
-
[[Category: Edwards, A.]]
+
[[Category: Evdokimova, E]]
-
[[Category: Evdokimova, E.]]
+
[[Category: Joachimiak, A]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Kagan, O]]
-
[[Category: Kagan, O.]]
+
[[Category: Structural genomic]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Osipiuk, J]]
-
[[Category: Osipiuk, J.]]
+
[[Category: Savchenko, A]]
-
[[Category: Savchenko, A.]]
+
[[Category: Apc6349]]
-
[[Category: apc6349]]
+
[[Category: Grea/greb]]
-
[[Category: grea/greb]]
+
[[Category: Mcsg]]
-
[[Category: mcsg]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Transcription]]
-
[[Category: protein structure initiative]]
+
[[Category: Transcription elongation factor]]
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
[[Category: transcription elongation factor]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:40:13 2008''
+

Current revision

Prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea

PDB ID 2pn0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools