This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2pw6
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12== | ==Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12== | ||
| - | <StructureSection load='2pw6' size='340' side='right' caption='[[2pw6]], [[Resolution|resolution]] 2.27Å' scene=''> | + | <StructureSection load='2pw6' size='340' side='right'caption='[[2pw6]], [[Resolution|resolution]] 2.27Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2pw6]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2pw6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PW6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PW6 FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ygiD, b3039, JW3007 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ygiD, b3039, JW3007 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pw6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pw6 OCA], [https://pdbe.org/2pw6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pw6 RCSB], [https://www.ebi.ac.uk/pdbsum/2pw6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pw6 ProSAT], [https://www.topsan.org/Proteins/RSGI/2pw6 TOPSAN]</span></td></tr> |
| - | <table> | + | </table> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pw/2pw6_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pw/2pw6_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pw6 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Ecoli]] |
| - | [[Category: Chen, L | + | [[Category: Large Structures]] |
| - | [[Category: Ebihara, A | + | [[Category: Chen, L]] |
| - | [[Category: Kuramitsu, S | + | [[Category: Ebihara, A]] |
| - | [[Category: Li, Y | + | [[Category: Kuramitsu, S]] |
| - | [[Category: Liu, Z J | + | [[Category: Li, Y]] |
| - | [[Category: Newton, M G | + | [[Category: Liu, Z J]] |
| - | [[Category: | + | [[Category: Newton, M G]] |
| - | [[Category: Rose, J P | + | [[Category: Structural genomic]] |
| - | [[Category: Ruble, J | + | [[Category: Rose, J P]] |
| - | + | [[Category: Ruble, J]] | |
| - | [[Category: Shinkai, A | + | [[Category: Shinkai, A]] |
| - | [[Category: Takagi, Y | + | [[Category: Takagi, Y]] |
| - | [[Category: Wang, B | + | [[Category: Wang, B C]] |
| - | [[Category: Yokayama, S | + | [[Category: Yokayama, S]] |
| - | [[Category: Zhu, J | + | [[Category: Zhu, J]] |
| - | + | ||
[[Category: Jw3007]] | [[Category: Jw3007]] | ||
[[Category: Protein structure]] | [[Category: Protein structure]] | ||
| - | [[Category: Protein structure initiative]] | + | [[Category: PSI, Protein structure initiative]] |
[[Category: Riken and psi]] | [[Category: Riken and psi]] | ||
| - | [[Category: Riken structural genomics/proteomics initiative]] | ||
[[Category: Rsgi]] | [[Category: Rsgi]] | ||
[[Category: Secsg]] | [[Category: Secsg]] | ||
| - | [[Category: Southeast collaboratory for structural genomic]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Uncharacterized protein]] | [[Category: Uncharacterized protein]] | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
Current revision
Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12
| |||||||||||
Categories: Ecoli | Large Structures | Chen, L | Ebihara, A | Kuramitsu, S | Li, Y | Liu, Z J | Newton, M G | Structural genomic | Rose, J P | Ruble, J | Shinkai, A | Takagi, Y | Wang, B C | Yokayama, S | Zhu, J | Jw3007 | Protein structure | PSI, Protein structure initiative | Riken and psi | Rsgi | Secsg | Uncharacterized protein | Unknown function
