This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qgv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2qgv" [edit=sysop:move=sysop])
Current revision (08:19, 25 June 2021) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qgv.png|left|200px]]
 
-
{{STRUCTURE_2qgv| PDB=2qgv | SCENE= }}
+
==Crystal structure of hydrogenase-1 operon protein hyaE from Shigella flexneri. Northeast Structural Genomics Consortium Target SfR170==
-
 
+
<StructureSection load='2qgv' size='340' side='right'caption='[[2qgv]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
===Crystal structure of hydrogenase-1 operon protein hyaE from Shigella flexneri. Northeast Structural Genomics Consortium Target SfR170===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2qgv]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri_2a_str._301 Shigella flexneri 2a str. 301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QGV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QGV FirstGlance]. <br>
-
 
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==About this Structure==
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hyaE, SF0977, S_1044 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198214 Shigella flexneri 2a str. 301])</td></tr>
-
[[2qgv]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri_2a Shigella flexneri 2a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QGV OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qgv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qgv OCA], [https://pdbe.org/2qgv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qgv RCSB], [https://www.ebi.ac.uk/pdbsum/2qgv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qgv ProSAT], [https://www.topsan.org/Proteins/NESGC/2qgv TOPSAN]</span></td></tr>
-
[[Category: Shigella flexneri 2a]]
+
</table>
-
[[Category: Acton, T B.]]
+
== Evolutionary Conservation ==
-
[[Category: Baran, M C.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Benach, J.]]
+
Check<jmol>
-
[[Category: Cunningham, K.]]
+
<jmolCheckbox>
-
[[Category: Fang, Y.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qg/2qgv_consurf.spt"</scriptWhenChecked>
-
[[Category: Forouhar, F.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Hunt, J F.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Liu, J.]]
+
</jmolCheckbox>
-
[[Category: Ma, L-C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qgv ConSurf].
-
[[Category: Montelione, G T.]]
+
<div style="clear:both"></div>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
__TOC__
-
[[Category: Rost, B.]]
+
</StructureSection>
-
[[Category: Seetharaman, J.]]
+
[[Category: Large Structures]]
-
[[Category: Su, M.]]
+
[[Category: Shigella flexneri 2a str. 301]]
-
[[Category: Tong, L.]]
+
[[Category: Acton, T B]]
-
[[Category: Wang, D.]]
+
[[Category: Baran, M C]]
-
[[Category: Xiao, R.]]
+
[[Category: Benach, J]]
 +
[[Category: Cunningham, K]]
 +
[[Category: Fang, Y]]
 +
[[Category: Forouhar, F]]
 +
[[Category: Hunt, J F]]
 +
[[Category: Liu, J]]
 +
[[Category: Ma, L C]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Rost, B]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Su, M]]
 +
[[Category: Tong, L]]
 +
[[Category: Wang, D]]
 +
[[Category: Xiao, R]]
[[Category: Alpha-beta protein]]
[[Category: Alpha-beta protein]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

Crystal structure of hydrogenase-1 operon protein hyaE from Shigella flexneri. Northeast Structural Genomics Consortium Target SfR170

PDB ID 2qgv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools