This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qp2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Structure of a MACPF/perforin-like protein==
==Structure of a MACPF/perforin-like protein==
-
<StructureSection load='2qp2' size='340' side='right' caption='[[2qp2]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='2qp2' size='340' side='right'caption='[[2qp2]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2qp2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ccm_7076 Ccm 7076]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QP2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2QP2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2qp2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ccm_7076 Ccm 7076]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QP2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QP2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Photorhabdus luminescens ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=141679 CCM 7076])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Photorhabdus luminescens ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=141679 CCM 7076])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qp2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qp2 OCA], [http://pdbe.org/2qp2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2qp2 RCSB], [http://www.ebi.ac.uk/pdbsum/2qp2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2qp2 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qp2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qp2 OCA], [https://pdbe.org/2qp2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qp2 RCSB], [https://www.ebi.ac.uk/pdbsum/2qp2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qp2 ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 12: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qp/2qp2_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qp/2qp2_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 32:
</StructureSection>
</StructureSection>
[[Category: Ccm 7076]]
[[Category: Ccm 7076]]
 +
[[Category: Large Structures]]
[[Category: Baran, K]]
[[Category: Baran, K]]
[[Category: Bashtannyk-Puhalovich, T A]]
[[Category: Bashtannyk-Puhalovich, T A]]

Revision as of 08:27, 25 June 2021

Structure of a MACPF/perforin-like protein

PDB ID 2qp2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qp2"
Personal tools