This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qqz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:30, 25 June 2021) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2qqz.png|left|200px]]
 
-
<!--
+
==Crystal structure of putative glyoxalase family protein from Bacillus anthracis==
-
The line below this paragraph, containing "STRUCTURE_2qqz", creates the "Structure Box" on the page.
+
<StructureSection load='2qqz' size='340' side='right'caption='[[2qqz]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2qqz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_(strain_ames) Bacillus anthracis (strain ames)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QQZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QQZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2qqz| PDB=2qqz | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAS3431, BA_3701, GBAA3701 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis (strain Ames)])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qqz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qqz OCA], [https://pdbe.org/2qqz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qqz RCSB], [https://www.ebi.ac.uk/pdbsum/2qqz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qqz ProSAT], [https://www.topsan.org/Proteins/MCSG/2qqz TOPSAN]</span></td></tr>
-
===Crystal structure of putative glyoxalase family protein from Bacillus anthracis===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2QQZ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_anthracis_str._ames Bacillus anthracis str. ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QQZ OCA].
+
<jmolCheckbox>
-
[[Category: Bacillus anthracis str. ames]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qq/2qqz_consurf.spt"</scriptWhenChecked>
-
[[Category: Gornicki, P.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Joachimiak, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joachimiak, G.]]
+
</jmolCheckbox>
-
[[Category: Kim, Y.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qqz ConSurf].
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Patterson, S.]]
+
__TOC__
-
[[Category: Wu, R.]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Gornicki, P]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Joachimiak, G]]
 +
[[Category: Kim, Y]]
 +
[[Category: Structural genomic]]
 +
[[Category: Patterson, S]]
 +
[[Category: Wu, R]]
[[Category: Alpha-beta structure]]
[[Category: Alpha-beta structure]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:04:11 2008''
 

Current revision

Crystal structure of putative glyoxalase family protein from Bacillus anthracis

PDB ID 2qqz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qqz"
Personal tools