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2qrz

From Proteopedia

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(New page: 200px {{Structure |PDB= 2qrz |SIZE=350|CAPTION= <scene name='initialview01'>2qrz</scene>, resolution 2.400&Aring; |SITE= <scene name='pdbsite=AC1:Mg+Binding+Site+...)
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[[Image:2qrz.jpg|left|200px]]
 
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{{Structure
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==Cdc42 bound to GMP-PCP: Induced Fit by Effector is Required==
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|PDB= 2qrz |SIZE=350|CAPTION= <scene name='initialview01'>2qrz</scene>, resolution 2.400&Aring;
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<StructureSection load='2qrz' size='340' side='right'caption='[[2qrz]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+190'>AC1</scene>, <scene name='pdbsite=AC2:Mg+Binding+Site+For+Residue+B+190'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+3638'>AC3</scene>, <scene name='pdbsite=AC4:Gcp+Binding+Site+For+Residue+A+3639'>AC4</scene> and <scene name='pdbsite=AC5:Gcp+Binding+Site+For+Residue+B+191'>AC5</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=GCP:PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER'>GCP</scene>
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<table><tr><td colspan='2'>[[2qrz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QRZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QRZ FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GCP:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANYLATE+ESTER'>GCP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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|GENE= Cdc42 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Cdc42 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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}}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qrz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qrz OCA], [https://pdbe.org/2qrz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qrz RCSB], [https://www.ebi.ac.uk/pdbsum/2qrz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qrz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/CDC42_HUMAN CDC42_HUMAN]] Plasma membrane-associated small GTPase which cycles between an active GTP-bound and an inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses. Involved in epithelial cell polarization processes. Regulates the bipolar attachment of spindle microtubules to kinetochores before chromosome congression in metaphase. Plays a role in the extension and maintenance of the formation of thin, actin-rich surface projections called filopodia. Mediates CDC42-dependent cell migration.<ref>PMID:14978216</ref> <ref>PMID:15642749</ref> <ref>PMID:17038317</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qr/2qrz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qrz ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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GTP-binding (G) proteins regulate the flow of information in cellular signaling pathways by alternating between a GTP-bound "active" state and a GDP-bound "inactive" state. Cdc42, a member of the Rho family of Ras-related small G-proteins, plays key roles in the regulation of cell shape, motility, and growth. Here we describe the high resolution x-ray crystal structure for Cdc42 bound to the GTP analog guanylyl beta,gamma-methylene-diphosphonate (GMP-PCP) (i.e. the presumed signaling-active state) and show that it is virtually identical to the structures for the signaling-inactive, GDP-bound form of the protein, contrary to what has been reported for Ras and other G-proteins. Especially surprising was that the GMP-PCP- and GDP-bound forms of Cdc42 did not show detectable differences in their Switch I and Switch II loops. Fluorescence studies using a Cdc42 mutant in which a tryptophan residue was introduced at position 32 of Switch I also showed that there was little difference in the Switch I conformation between the GDP- and GMP-PCP-bound states (i.e. &lt;10%), which again differed from Ras where much larger changes in Trp-32 fluorescence were observed when comparing these two nucleotide-bound states (&gt;30%). However, the binding of an effector protein induced significant changes in the Trp-32 emission specifically from GMP-PCP-bound Cdc42, as well as in the phosphate resonances for GTP bound to this G-protein as indicated in NMR studies. An examination of the available structures for Cdc42 complexed to different effector proteins, versus the x-ray crystal structure for GMP-PCP-bound Cdc42, provides a possible explanation for how effectors can distinguish between the GTP- and GDP-bound forms of this G-protein and ensure that the necessary conformational changes for signal propagation occur.
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'''Cdc42 bound to GMP-PCP: Induced Fit by Effector is Required'''
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Effector proteins exert an important influence on the signaling-active state of the small GTPase Cdc42.,Phillips MJ, Calero G, Chan B, Ramachandran S, Cerione RA J Biol Chem. 2008 May 16;283(20):14153-64. Epub 2008 Mar 18. PMID:18348980<ref>PMID:18348980</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2qrz" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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2QRZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QRZ OCA].
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*[[GTP-binding protein 3D structures|GTP-binding protein 3D structures]]
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[[Category: Homo sapiens]]
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== References ==
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[[Category: Single protein]]
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<references/>
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[[Category: Calero, G A.]]
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__TOC__
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[[Category: Cerione, R A.]]
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</StructureSection>
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[[Category: Chan, B.]]
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[[Category: Human]]
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[[Category: Phillips, M J.]]
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[[Category: Large Structures]]
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[[Category: GCP]]
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[[Category: Calero, G]]
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[[Category: MG]]
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[[Category: Cerione, R A]]
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[[Category: SO4]]
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[[Category: Chan, B]]
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[[Category: alternative splicing]]
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[[Category: Phillips, M J]]
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[[Category: cell cycle]]
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[[Category: Alternative splicing]]
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[[Category: g protein]]
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[[Category: Cell cycle]]
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[[Category: g-domain fold]]
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[[Category: G protein]]
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[[Category: gtp-binding]]
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[[Category: G-domain fold]]
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[[Category: gtpase]]
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[[Category: Gtp-binding]]
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[[Category: lipoprotein]]
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[[Category: Gtpase]]
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[[Category: membrane]]
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[[Category: Lipoprotein]]
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[[Category: methylation]]
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[[Category: Membrane]]
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[[Category: nucleotide-binding]]
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[[Category: Methylation]]
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[[Category: prenylation]]
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[[Category: Nucleotide-binding]]
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[[Category: Prenylation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:29:02 2008''
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Current revision

Cdc42 bound to GMP-PCP: Induced Fit by Effector is Required

PDB ID 2qrz

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